8VNV | pdb_00008vnv

PRC2_AJ1-450 bound to H3K36me3 with histone H3 tail engaged


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyVEFS box-like 8090819 3002459 SCOP2B (2022-06-29)
C [auth N]SCOP2B SuperfamilyWD40 repeat-like 8053350 3001694 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth L]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth N]PF12265Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd)Histone-binding protein RBBP4 or subunit C of CAF1 complex- Repeat
C [auth N]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth C]PF18264CXC domain (preSET_CXC)CXC domainThis domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain. Domain
D [auth C]PF00856SET domain (SET)SET domain- Family
D [auth C]PF18118Polycomb repressive complex 2 tri-helical domain (PRC2_HTH_1)Polycomb repressive complex 2 tri-helical domainThis domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain mak ...This domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain makes up part of the N-lobe which is involved in regulation [1].
Domain
D [auth C]PF11616WD repeat binding protein EZH2 (EZH2_WD-Binding)WD repeat binding protein EZH2- Family
D [auth C]PF21358Ezh2, MCSS domain (Ezh2_MCSS)Ezh2, MCSS domainThis entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding mot ...This entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding motif and contributes two cysteine residues for a second one, formed with two cysteines from the SANT domain [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Polycomb protein SUZ12
B [auth L]EED
C [auth N]RBAP48
D [auth C]Isoform 2 of Histone-lysine N-methyltransferase EZH2
E [auth B]Protein Jumonji
F [auth P]Zinc finger protein AEBP2
G [auth H]DNA (26-mer)---
H [auth I]H3K36me3-modified histone H3
I [auth D]DNA (26-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019135Polycomb protein, VEFS-BoxDomain
B [auth L]IPR019775WD40 repeat, conserved siteConserved Site
B [auth L]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth L]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B [auth L]IPR001680WD40 repeatRepeat
B [auth L]IPR051243Polycomb group WD repeat-containing proteinFamily
C [auth N]IPR050459WD repeat RBAP46/RBAP48/MSI1Family
C [auth N]IPR019775WD40 repeat, conserved siteConserved Site
C [auth N]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C [auth N]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth N]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth N]IPR022052Histone-binding protein RBBP4-like, N-terminalDomain
C [auth N]IPR001680WD40 repeatRepeat
D [auth C]IPR048358EZH1/2, MCSS domainDomain
D [auth C]IPR041343Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domainDomain
D [auth C]IPR046341SET domain superfamilyHomologous Superfamily
D [auth C]IPR001214SET domainDomain
D [auth C]IPR045318Histone-lysine N-methyltransferase EZH1/2-likeFamily
D [auth C]IPR033467Tesmin/TSO1-like CXC domainDomain
D [auth C]IPR044439EZH2, SET domainDomain
D [auth C]IPR026489CXC domainDomain
D [auth C]IPR041355Pre-SET CXC domainDomain
D [auth C]IPR001005SANT/Myb domainDomain
D [auth C]IPR021654Histone-lysine N-methyltransferase EZH1/EZH2Family
E [auth B]IPR003347JmjC domainDomain
E [auth B]IPR003349JmjN domainDomain
E [auth B]IPR001606ARID DNA-binding domainDomain
E [auth B]IPR004198Zinc finger, C5HC2-typeDomain
E [auth B]IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
F [auth P]IPR013087Zinc finger C2H2-typeDomain
F [auth P]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
F [auth P]IPR052130AEBP2/jing C2H2-type zinc-fingerFamily
H [auth I]IPR009072Histone-foldHomologous Superfamily
H [auth I]IPR007125Histone H2A/H2B/H3Domain
H [auth I]IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ15022
B [auth L]PharosO75530
C [auth N]PharosQ09028
D [auth C]PharosQ15910
E [auth B]PharosQ92833
F [auth P]PharosQ6ZN18
H [auth I]PharosP68431

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E [auth B]M3L Parent Component: LYS

RESIDAA0074

PSI-MOD :  N6,N6,N6-trimethyl-L-lysine MOD:00083
H [auth I]M3L Parent Component: LYS

RESIDAA0074 , AA0074

PSI-MOD :  N6,N6,N6-trimethyl-L-lysine MOD:00083 , N6,N6,N6-trimethyl-L-lysine MOD:00083