8YW0 | pdb_00008yw0

Semliki Forest virus viron


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
E [auth F],
F [auth G],
G [auth H]
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
B,
H [auth I],
I [auth J],
J [auth K]
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
C,
K [auth L],
L [auth M],
M [auth N]
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
D,
N [auth O],
O [auth P],
P [auth Q]
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
Q [auth E],
R,
S [auth T]
PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
E [auth F],
F [auth G],
G [auth H]
Spike glycoprotein E1
B,
H [auth I],
I [auth J],
J [auth K]
Spike glycoprotein E2
C,
K [auth L],
L [auth M],
M [auth N]
Spike glycoprotein E3
D,
N [auth O],
O [auth P],
P [auth Q]
capsid protein, partial
Q [auth E],
R,
S [auth T]
Very low-density lipoprotein receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
E [auth F],
F [auth G],
G [auth H]
IPR002533Alphavirus E3 spike glycoproteinDomain
A,
E [auth F],
F [auth G],
G [auth H]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR014756Immunoglobulin E-setHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR000936Alphavirus E2 glycoproteinFamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR000930Peptidase S3, togavirinDomain
A,
E [auth F],
F [auth G],
G [auth H]
IPR002548Alphavirus E1 glycoproteinDomain
A,
E [auth F],
F [auth G],
G [auth H]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR002533Alphavirus E3 spike glycoproteinDomain
B,
H [auth I],
I [auth J],
J [auth K]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR014756Immunoglobulin E-setHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR000936Alphavirus E2 glycoproteinFamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR000930Peptidase S3, togavirinDomain
B,
H [auth I],
I [auth J],
J [auth K]
IPR002548Alphavirus E1 glycoproteinDomain
B,
H [auth I],
I [auth J],
J [auth K]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR002533Alphavirus E3 spike glycoproteinDomain
C,
K [auth L],
L [auth M],
M [auth N]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR014756Immunoglobulin E-setHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR000936Alphavirus E2 glycoproteinFamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR000930Peptidase S3, togavirinDomain
C,
K [auth L],
L [auth M],
M [auth N]
IPR002548Alphavirus E1 glycoproteinDomain
C,
K [auth L],
L [auth M],
M [auth N]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR002533Alphavirus E3 spike glycoproteinDomain
D,
N [auth O],
O [auth P],
P [auth Q]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR014756Immunoglobulin E-setHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR009003Peptidase S1, PA clanHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR000936Alphavirus E2 glycoproteinFamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR000930Peptidase S3, togavirinDomain
D,
N [auth O],
O [auth P],
P [auth Q]
IPR002548Alphavirus E1 glycoproteinDomain
D,
N [auth O],
O [auth P],
P [auth Q]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
Q [auth E],
R,
S [auth T]
IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
Q [auth E],
R,
S [auth T]
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
Q [auth E],
R,
S [auth T]
IPR018097EGF-like calcium-binding, conserved siteConserved Site
Q [auth E],
R,
S [auth T]
IPR036055LDL receptor-like superfamilyHomologous Superfamily
Q [auth E],
R,
S [auth T]
IPR000742EGF-like domainDomain
Q [auth E],
R,
S [auth T]
IPR049883NOTCH1 EGF-like calcium-binding domainDomain
Q [auth E],
R,
S [auth T]
IPR051221Low-density lipoprotein receptor-relatedFamily
Q [auth E],
R,
S [auth T]
IPR000033LDLR class B repeatRepeat
Q [auth E],
R,
S [auth T]
IPR001881EGF-like calcium-binding domainDomain
Q [auth E],
R,
S [auth T]
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
Q [auth E],
R,
S [auth T]
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM