8ZZC | pdb_00008zzc

Integrative structure and functional anatomy of eight spokes of a nuclear pore complex


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, BR, BY, CF, CM
Nup84
B, BS, BZ, CG, CN
Nup85
BT, C, CA, CH, CO
Nup120
BU, CB, CI, CP, CW
Nup133
BV, CC, CJ, CQ, CX
Nup145c
BW, CD, CK, CR, CY
Seh1
BX, CE, CL, CS, CZ
Sec13
FL, FM, FT, FU, GB
Dyn2
FN, FO, FV, FW, GD
Nup82
FP, FQ, FX, FY, GF
Nup159
AB, AF, AJ, FR, FS
Nsp1
AA, AE, AI, HP, HQ
Nic96
AC, AG, AK, HT, HU
Nup49
AD, AH, AL, HV, HW
Nup57
AM, AQ, LX, MB, MF
Nup157
AN, AR, LY, MC, MG
Nup170
AO, AS, LZ, MD, MH
Nup188
AP, AT, MA, ME, MI
Nup192
AU, AZ, OB, OG, OL
Nup53
AV, BA, OC, OH, OM
Nup59
AW, BB, OD, OI, ON
Ndc1
AX, BC, OE, OJ, OO
Pom34
AY, BD, OF, OK, OP
Pom152
BE, BF, QT, QU, QZ
Nup100
BG, BH, QV, QW, RB
Nup116
BJ, QY, RE, RK, RQ
Gle1
BK, BL, SJ, SK, SO
Nup145
BM, SN, SS, SX, TC
Nup1
BN, BO, SL, SM, SQ
Nup60
BP, TS, TU, TW, TY
Mlp1
BQ, TT, TV, TX, TZ
Mlp2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, BR, BY, CF, CM
IPR007252Nuclear pore protein 84/107Family
B, BS, BZ, CG, CN
IPR011502Nucleoporin Nup85-likeFamily
BT, C, CA, CH, CO
IPR021717Nucleoporin Nup120/160Family
BT, C, CA, CH, CO
IPR055090Nucleoporin NUP120, helical domain, saccharomycetesDomain
BU, CB, CI, CP, CW
IPR037624Nuclear pore complex protein Nup133-likeFamily
BU, CB, CI, CP, CW
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BU, CB, CI, CP, CW
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
BV, CC, CJ, CQ, CX
IPR025574Nucleoporin FG repeatRepeat
BV, CC, CJ, CQ, CX
IPR037665Nucleoporin peptidase S59-likeFamily
BV, CC, CJ, CQ, CX
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
BV, CC, CJ, CQ, CX
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
BV, CC, CJ, CQ, CX
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
BW, CD, CK, CR, CY
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BW, CD, CK, CR, CY
IPR037363Sec13/Seh1 familyFamily
BW, CD, CK, CR, CY
IPR001680WD40 repeatRepeat
BW, CD, CK, CR, CY
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BX, CE, CL, CS, CZ
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BX, CE, CL, CS, CZ
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BX, CE, CL, CS, CZ
IPR037363Sec13/Seh1 familyFamily
BX, CE, CL, CS, CZ
IPR001680WD40 repeatRepeat
FL, FM, FT, FU, GB
IPR037177Dynein light chain superfamilyHomologous Superfamily
FL, FM, FT, FU, GB
IPR001372Dynein light chain, type 1/2Family
FL, FM, FT, FU, GB
IPR019763Dynein light chain, type 1/2, conserved siteConserved Site
FN, FO, FV, FW, GD
IPR037700Nucleoporin NUP88/NUP82Family
FP, FQ, FX, FY, GF
IPR039462Nucleoporin Nup159/Nup146, N-terminalDomain
FP, FQ, FX, FY, GF
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AB, AF, AJ, FR, FS
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
AB, AF, AJ, FR, FS
IPR026010Nucleoporin NSP1/NUP62Family
AA, AE, AI, HP, HQ
IPR007231Nucleoporin interacting component Nup93/Nic96Family
AC, AG, AK, HT, HU
IPR024882Nucleoporin p58/p45/NUP49Family
AC, AG, AK, HT, HU
IPR025574Nucleoporin FG repeatRepeat
AD, AH, AL, HV, HW
IPR025574Nucleoporin FG repeatRepeat
AD, AH, AL, HV, HW
IPR024864Nucleoporin Nup54/Nup57/Nup44Family
AD, AH, AL, HV, HW
IPR025712Nucleoporin Nup54, alpha-helical domainDomain
AM, AQ, LX, MB, MF
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
AM, AQ, LX, MB, MF
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
AM, AQ, LX, MB, MF
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
AM, AQ, LX, MB, MF
IPR004870Nucleoporin, Nup155-likeFamily
AM, AQ, LX, MB, MF
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
AN, AR, LY, MC, MG
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
AN, AR, LY, MC, MG
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
AN, AR, LY, MC, MG
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
AN, AR, LY, MC, MG
IPR004870Nucleoporin, Nup155-likeFamily
AN, AR, LY, MC, MG
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
AO, AS, LZ, MD, MH
IPR044840Nucleoporin Nup188Family
AO, AS, LZ, MD, MH
IPR041634Nuclear pore protein Nup188, C-terminalDomain
AO, AS, LZ, MD, MH
IPR048883Nucleoporin Nup188, N-terminal subdomain IIIDomain
AO, AS, LZ, MD, MH
IPR018864Nucleoporin Nup188, N-terminalDomain
AP, AT, MA, ME, MI
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
AU, AZ, OB, OG, OL
IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
AU, AZ, OB, OG, OL
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AU, AZ, OB, OG, OL
IPR035979RNA-binding domain superfamilyHomologous Superfamily
AV, BA, OC, OH, OM
IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
AV, BA, OC, OH, OM
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AV, BA, OC, OH, OM
IPR035979RNA-binding domain superfamilyHomologous Superfamily
AW, BB, OD, OI, ON
IPR019049Nucleoporin protein Ndc1-NupFamily
AX, BC, OE, OJ, OO
IPR012578Nuclear pore complex componentFamily
AY, BD, OF, OK, OP
IPR056544Nucleoporin POM152, immunoglobulin-like domainDomain
AY, BD, OF, OK, OP
IPR056540Nucleoporin POM152, N-terminal transmembrane domainDomain
AY, BD, OF, OK, OP
IPR056542Nucleoporin POM152, first Ig-like domainDomain
AY, BD, OF, OK, OP
IPR056543Nucleoporin POM152, ninth Ig-like domainDomain
AY, BD, OF, OK, OP
IPR037701Nucleoporin Pom152Family
AY, BD, OF, OK, OP
IPR056541Nucleoporin POM152, Ig-like domainDomain
BE, BF, QT, QU, QZ
IPR025574Nucleoporin FG repeatRepeat
BE, BF, QT, QU, QZ
IPR037665Nucleoporin peptidase S59-likeFamily
BE, BF, QT, QU, QZ
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
BE, BF, QT, QU, QZ
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
BG, BH, QV, QW, RB
IPR025574Nucleoporin FG repeatRepeat
BG, BH, QV, QW, RB
IPR037665Nucleoporin peptidase S59-likeFamily
BG, BH, QV, QW, RB
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
BG, BH, QV, QW, RB
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
BJ, QY, RE, RK, RQ
IPR012476mRNA export factor GLE1-likeFamily
BJ, QY, RE, RK, RQ
IPR038506GLE1-like superfamilyHomologous Superfamily
BK, BL, SJ, SK, SO
IPR025574Nucleoporin FG repeatRepeat
BK, BL, SJ, SK, SO
IPR037665Nucleoporin peptidase S59-likeFamily
BK, BL, SJ, SK, SO
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
BK, BL, SJ, SK, SO
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
BK, BL, SJ, SK, SO
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
BN, BO, SL, SM, SQ
IPR034432Nucleoporin nup60Family
BP, TS, TU, TW, TY
IPR001611Leucine-rich repeatRepeat
BP, TS, TU, TW, TY
IPR012929Nucleoprotein, TPR/MLP1-2 domainDomain