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 9AAV | pdb_00009aav

Integrative structure of the human nuclear pore complex nuclear basket


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A1, A2, A3, A4, A5
E3 SUMO-protein ligase RanBP2
Sphingomyelin phosphodiesterase 4
Nuclear pore complex protein Nup133
Nuclear pore complex protein Nup96 (NUP96 part of NUP98-NUP96 precursor, P52948)
N1, N2, N3, N4, N5
Nuclear pore complex protein TPR
Nuclear pore complex protein Nup62
Nuclear pore complex protein Nup205
Nuclear pore complex protein Nup188
Nuclear pore complex protein Nup93
U1, U2, U3, U4, U5
Nuclear pore complex protein Nup50-
T1, T2, T3, T4, T5
Germinal-center associated nuclear protein
Nuclear pore complex protein ELYS-
P1, P2, P3, P4, P5
ALADIN-
Nuclear pore complex protein Nup43-
Nuclear pore complex protein Nup85
Nucleoporin Seh1
Protein SEC13 homolog
Nuclear envelope pore membrane protein POM 121
Nuclear pore complex protein Nup214
Nuclear pore complex protein Nup98
Nuclear pore complex protein Nup58
Nuclear pore complex protein Nup54
Nuclear pore complex protein Nup42
Nuclear pore complex protein GLE1
ATP-dependent RNA helicase DDX19B
Spliceosome RNA helicase DDX39B
26S proteasome complex subunit SEM1
PCI domain-containing protein 2
Transcription/export complex protein 2 homolog
Centrin-2
Nuclear pore complex protein Nup153
Transmembrane protein 209- -
F1, F2, F3, F4, F5
Nuclear pore membrane glycoprotein 210-
Nuclear pore complex protein Nup88
Nuclear pore complex protein Nup37-
Nuclear pore complex protein Nup160
Nuclear pore complex protein Nup107
Nuclear pore complex protein Nup35
Nuclear envelope protein NDC1
Nuclear pore complex protein Nup155

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A1, A2, A3, A4, A5
IPR022011Nup358/RanBP2 E3 ligase domainDomain
A1, A2, A3, A4, A5
IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
A1, A2, A3, A4, A5
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
A1, A2, A3, A4, A5
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A1, A2, A3, A4, A5
IPR011993PH-like domain superfamilyHomologous Superfamily
A1, A2, A3, A4, A5
IPR019734Tetratricopeptide repeatRepeat
A1, A2, A3, A4, A5
IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
A1, A2, A3, A4, A5
IPR036443Zinc finger, RanBP2-type superfamilyHomologous Superfamily
A1, A2, A3, A4, A5
IPR000156Ran binding domainDomain
A1, A2, A3, A4, A5
IPR001876Zinc finger, RanBP2-typeDomain
A1, A2, A3, A4, A5
IPR045255Ran binding protein RanBP1-likeFamily
IPR024129Sphingomyelin phosphodiesterase 4Family
IPR037624Nuclear pore complex protein Nup133-likeFamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
IPR037665Nucleoporin peptidase S59-likeFamily
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
N1, N2, N3, N4, N5
IPR012929Nucleoprotein, TPR/MLP1-2 domainDomain
N1, N2, N3, N4, N5
IPR057577Nucleoprotein, TPR/MPL1 domainDomain
N1, N2, N3, N4, N5
IPR057974NUA/TPR/MLP1-2-like domainDomain
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
IPR026010Nucleoporin NSP1/NUP62Family
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
IPR016024Armadillo-type foldHomologous Superfamily
IPR044840Nucleoporin Nup188Family
IPR048883Nucleoporin Nup188, N-terminal subdomain IIIDomain
IPR018864Nucleoporin Nup188, N-terminalDomain
IPR007231Nucleoporin interacting component Nup93/Nic96Family
U1, U2, U3, U4, U5
IPR015007Nuclear pore complex, NUP2/50/61Domain
U1, U2, U3, U4, U5
IPR011993PH-like domain superfamilyHomologous Superfamily
U1, U2, U3, U4, U5
IPR000156Ran binding domainDomain
U1, U2, U3, U4, U5
IPR045255Ran binding protein RanBP1-likeFamily
T1, T2, T3, T4, T5
IPR031907Germinal-centre associated nuclear protein, MCM3AP N-terminal domainDomain
T1, T2, T3, T4, T5
IPR034265MCM3AP, RNA recognition motifDomain
T1, T2, T3, T4, T5
IPR031908Germinal-centre associated nuclear protein, nucleoporin homology domainDomain
T1, T2, T3, T4, T5
IPR062097GANP, MCM3AP C-terminal domainDomain
T1, T2, T3, T4, T5
IPR045107SAC3/GANP/THP3Family
T1, T2, T3, T4, T5
IPR000717Proteasome component (PCI) domainDomain
T1, T2, T3, T4, T5
IPR031910Germinal-centre associated nuclear protein, CID domainDomain
T1, T2, T3, T4, T5
IPR035979RNA-binding domain superfamilyHomologous Superfamily
T1, T2, T3, T4, T5
IPR005062SAC3/GANP/THP3, conserved domainDomain
IPR025151ELYS-like domainDomain
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
IPR032040ELYS, beta-propeller domainDomain
IPR052620ELYS/MEL-28 Nuclear Assembly FactorFamily
P1, P2, P3, P4, P5
IPR057403Aladin, seven-bladed propellerDomain
P1, P2, P3, P4, P5
IPR019775WD40 repeat, conserved siteConserved Site
P1, P2, P3, P4, P5
IPR045139AladinFamily
P1, P2, P3, P4, P5
IPR001680WD40 repeatRepeat
P1, P2, P3, P4, P5
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR019775WD40 repeat, conserved siteConserved Site
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR011502Nucleoporin Nup85-likeFamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR037363Sec13/Seh1 familyFamily
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001680WD40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR037363Sec13/Seh1 familyFamily
IPR001680WD40 repeatRepeat
IPR026054Nuclear pore complex proteinFamily
IPR039462Nucleoporin Nup159/Nup146, N-terminalDomain
IPR041553Nuclear pore complex protein Nup214, phenylalanine-glycine (FG) domainDomain
IPR001680WD40 repeatRepeat
IPR026054Nuclear pore complex proteinFamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR037665Nucleoporin peptidase S59-likeFamily
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
IPR024882Nucleoporin p58/p45/NUP49Family
IPR040985Nup54, C-terminal interacting domainDomain
IPR024864Nucleoporin Nup54/Nup57/Nup44Family
IPR063117Nup54, alpha/beta domainDomain
IPR025712Nucleoporin Nup54, alpha-helical domainDomain
IPR000571Zinc finger, CCCH-typeDomain
IPR060306NUP42, C-terminal domainDomain
IPR051767Nucleoporin NUP42 domain-containing proteinFamily
IPR063609NUP42/Amo1, N-terminal domainDomain
IPR012476mRNA export factor GLE1-likeFamily
IPR038506GLE1-like superfamilyHomologous Superfamily
IPR001650Helicase, C-terminal domain-likeDomain
IPR014014RNA helicase, DEAD-box type, Q motifConserved Site
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR011545DEAD/DEAH-box helicase domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR014014RNA helicase, DEAD-box type, Q motifConserved Site
IPR011545DEAD/DEAH-box helicase domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001650Helicase, C-terminal domain-likeDomain
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR007834DSS1/SEM1Family
IPR045114Csn12 familyFamily
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR000717Proteasome component (PCI) domainDomain
IPR018783Transcription factor, enhancer of yellow 2Family
IPR038212Transcription factor EnY2 superfamilyHomologous Superfamily
IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
IPR050145Centrin/CML-likeFamily
IPR002048EF-hand domainDomain
IPR011992EF-hand domain pairHomologous Superfamily
IPR018247EF-Hand 1, calcium-binding siteBinding Site
IPR013913Nucleoporin Nup153, N-terminalDomain
IPR026054Nuclear pore complex proteinFamily
IPR036443Zinc finger, RanBP2-type superfamilyHomologous Superfamily
IPR018892Retro-transposon transporting motifConserved Site
IPR001876Zinc finger, RanBP2-typeDomain
IPR019176Cytochrome B561-relatedFamily
F1, F2, F3, F4, F5
IPR045197Nuclear pore membrane glycoprotein 210-likeFamily
F1, F2, F3, F4, F5
IPR055094NUP210, Ig-like domain 15Domain
F1, F2, F3, F4, F5
IPR056897NUP210, fourth Ig-like domainDomain
F1, F2, F3, F4, F5
IPR055096NUP210, Ig-like domain 1Domain
F1, F2, F3, F4, F5
IPR056898NUP210, Ig-like domain 6Domain
F1, F2, F3, F4, F5
IPR057586NUP210, Ig-like domain 16Domain
F1, F2, F3, F4, F5
IPR056899NUP210, Ig-like domain 9Domain
F1, F2, F3, F4, F5
IPR055098NUP210, Ig-like domain 3Domain
F1, F2, F3, F4, F5
IPR003343Bacterial Ig-like domain, group 2Domain
F1, F2, F3, F4, F5
IPR058779NUP210, Ig-like domain 13Domain
F1, F2, F3, F4, F5
IPR055097NUP210, Ig-like domain 2Domain
F1, F2, F3, F4, F5
IPR055099NUP210, Ig-like domain 7Domain
F1, F2, F3, F4, F5
IPR055095NUP210, C-terminal Ig-like domainDomain
F1, F2, F3, F4, F5
IPR008964Invasin/intimin cell-adhesion fragmentsHomologous Superfamily
IPR037700Nucleoporin NUP88/NUP82Family
IPR037626Nucleoporin Nup37Family
IPR001680WD40 repeatRepeat
IPR019775WD40 repeat, conserved siteConserved Site
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR021717Nucleoporin Nup120/160Family
IPR056547NUP160, helical domainDomain
IPR056535NUP160, middle TPR domainDomain
IPR059141Nucleoporin Nup120/160, beta-propeller domainDomain
IPR056536NUP160, C-terminal TPR domainDomain
IPR007252Nuclear pore protein 84/107Family
IPR017389Nucleoporin, NUP53Family
IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR035979RNA-binding domain superfamilyHomologous Superfamily
IPR019049Nucleoporin protein Ndc1-NupFamily
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
IPR042538Nucleoporin, Nup155-like, C-terminal, subdomain 3Homologous Superfamily
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
IPR004870Nucleoporin, Nup155-likeFamily
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A1, A2, A3, A4, A5
:  P49792
:  Q9NXE4
:  Q8WUM0
:  P52948
N1, N2, N3, N4, N5
:  P12270
:  P37198
:  Q92621
:  Q5SRE5
:  Q8N1F7
U1, U2, U3, U4, U5
:  Q9UKX7
T1, T2, T3, T4, T5
:  O60318
:  Q8WYP5
P1, P2, P3, P4, P5
:  Q9NRG9
:  Q8NFH3
:  Q9BW27
:  Q96EE3
:  P55735
:  Q96HA1
:  P35658
:  P52948
:  Q9BVL2
:  Q7Z3B4
:  O15504
:  Q53GS7
:  Q9UMR2
:  Q13838
:  P60896
:  Q5JVF3
:  Q9NPA8
:  P41208
:  P49790
:  Q96SK2
F1, F2, F3, F4, F5
:  Q8TEM1
:  Q99567
:  Q8NFH4
:  Q12769
:  P57740
:  Q8NFH5
:  Q9BTX1
:  O75694