9D0T | pdb_00009d0t

Proteasome core particle assembly intermediate Blm10:13S purified from Saccharomyces cerevisiae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
J [auth K]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
K [auth O]PF16507Proteasome activator complex subunit 4, mid HEAT repeats region (HEAT_PSME4_mid)Proteasome activator complex subunit 4, mid HEAT repeats region- Repeat
K [auth O]PF11919Proteasome activator complex subunit 4-like, C-terminal (PSME4_C)Proteasome activator complex subunit 4-like, C-terminalThis domain is found at the C-terminal end of human Proteasome activator complex subunit 4 (PSME4) and similar sequences from eukaryotes. PSME4 is an associated component of the proteasome that specifically recognises acetylated histones and promotes ...This domain is found at the C-terminal end of human Proteasome activator complex subunit 4 (PSME4) and similar sequences from eukaryotes. PSME4 is an associated component of the proteasome that specifically recognises acetylated histones and promotes ATP- and ubiquitin -independent degradation of core histones during spermatogenesis and DNA damage response. This protein adopts a dome-like structure composed of HEAT repeat-like modules and a C-terminal domain that contains a hydrophobic -tyrosine-other motif (this entry). This domain, which adopts an all-alpha structure, is responsible for the interaction with the alpha-ring surface of the 20S [1].
Domain
K [auth O]PF16547Proteasome-substrate-size regulator, N-terminal (BLM10_N)Proteasome-substrate-size regulator, N-terminalThe ordered regions of the yeast BLM10 or PA200 (human homologue), full-length protein encode 32 HEAT repeat (HR)-like modules [1], each comprising two helices joined by a turn, with adjacent repeats connected by a linker. Whereas a standard HEAT rep ...The ordered regions of the yeast BLM10 or PA200 (human homologue), full-length protein encode 32 HEAT repeat (HR)-like modules [1], each comprising two helices joined by a turn, with adjacent repeats connected by a linker. Whereas a standard HEAT repeat is composed of ~50 residues, the BLM10 HEAT repeats are highly variable. The length of helices ranges from 8 to 35 residues, turns range from 2 to 87 residues, and linkers range from 1 to 88 residues, with the longest linker, between HR21 and HR22, containing additional secondary structures (two strands and three helices). BLM10_N is the N-terminal ordered region of the three in BLM10. BLM10 is found to surround the proteasome entry pore in the 1.2 MDa complex of proteasome and BLM10 to form a largely closed dome that is expected to restrict access of potential substrates. BLM10 and PA200 are predominantly nuclear and stimulate the degradation of model peptides, although they do not appear to stimulate the degradation of proteins, recognise ubiquitin, or utilise ATP [2].
Domain
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
H [auth I]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
I [auth J]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Proteasome subunit alpha type-1-
J [auth K]Proteasome subunit beta type-4
K [auth O]Proteasome activator BLM10
L [auth P]Proteasome maturation factor UMP1,Myosin light chain kinase 2, skeletal/cardiac muscle
Proteasome subunit alpha type-2-
Proteasome subunit alpha type-3-
Proteasome subunit alpha type-4-
Proteasome subunit alpha type-5-
Proteasome subunit alpha type-6-
Probable proteasome subunit alpha type-7
H [auth I]Proteasome subunit beta type-2
I [auth J]Proteasome subunit beta type-3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR034642Proteasome subunit alpha6Family
J [auth K]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
J [auth K]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J [auth K]IPR023333Proteasome B-type subunitFamily
J [auth K]IPR001353Proteasome, subunit alpha/betaFamily
J [auth K]IPR035206Proteasome subunit beta 2Family
K [auth O]IPR016024Armadillo-type foldHomologous Superfamily
K [auth O]IPR032430Proteasome activator Blm10, middle HEAT repeats regionDomain
K [auth O]IPR032372Proteasome activator Blm10, N-terminalDomain
K [auth O]IPR055455Proteasome activator complex subunit 4-like, HEAT repeat-likeDomain
K [auth O]IPR035309Proteasome activator complex subunit 4Family
K [auth O]IPR021843Proteasome activator complex subunit 4, C-terminal domainDomain
L [auth P]IPR017441Protein kinase, ATP binding siteBinding Site
L [auth P]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
L [auth P]IPR000719Protein kinase domainDomain
L [auth P]IPR042717Myosin light chain kinase 2, catalytic domainDomain
L [auth P]IPR008271Serine/threonine-protein kinase, active siteActive Site
L [auth P]IPR008012Proteasome maturation factor Ump1Family
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR033812Proteasome subunit alpha5Family
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
IPR050115Proteasome subunit alphaFamily
IPR023332Proteasome alpha-type subunitFamily
IPR001353Proteasome, subunit alpha/betaFamily
H [auth I]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
H [auth I]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H [auth I]IPR024689Proteasome beta subunit, C-terminalDomain
H [auth I]IPR023333Proteasome B-type subunitFamily
H [auth I]IPR001353Proteasome, subunit alpha/betaFamily
H [auth I]IPR000243Peptidase T1A, proteasome beta-subunitFamily
I [auth J]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
I [auth J]IPR023333Proteasome B-type subunitFamily
I [auth J]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
I [auth J]IPR001353Proteasome, subunit alpha/betaFamily
I [auth J]IPR033811Proteasome beta 3 subunitFamily