9DDT | pdb_00009ddt

AAGAB pseudoGTPase domain in complex with AP-1 clathrin adaptor complex sigma 3 subunit

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SNARE-like	8082711	3001113	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01217	Clathrin adaptor complex small chain (Clat_adaptor_s)	Clathrin adaptor complex small chain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Alpha- and gamma-adaptin-binding protein p34	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen
B	AP-1 complex subunit sigma-3	cargo adaptor activity clathrin adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport organelle assembly cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport organelle assembly cellular pigmentation pigment granule organization vesicle organization cellular component organization cellular component biogenesis melanosome organization organelle organization pigmentation cellular component assembly cellular component organization or biogenesis melanosome assembly protein targeting vesicle-mediated transport platelet dense granule organization secretory granule organization endomembrane system organization	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane early endosome endosome endomembrane system clathrin-coated pit vacuolar membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane lysosome Golgi membrane Golgi apparatus cytosol Golgi apparatus subcompartment organelle subcompartment trans-Golgi network membrane trans-Golgi network protein-containing complex vesicle coat membrane protein complex transport vesicle membrane clathrin coat of trans-Golgi network vesicle membrane coat trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle AP-type membrane coat adaptor complex AP-1 adaptor complex clathrin-coated vesicle clathrin vesicle coat coated vesicle Golgi-associated vesicle clathrin-coated vesicle membrane transport vesicle coated membrane clathrin coat coated vesicle membrane Golgi-associated vesicle membrane clathrin adaptor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR019341	Alpha/gamma-adaptin-binding protein p34	Family
B	IPR016635	Adaptor protein complex, sigma subunit	Family
B	IPR011012	Longin-like domain superfamily	Homologous Superfamily
B	IPR044733	AP-1 complex subunit sigma	Family
B	IPR000804	Clathrin adaptor complex, small chain	Conserved Site
B	IPR022775	AP complex, mu/sigma subunit	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q6PD74	palmoplantar keratosis Keratosis palmoplantaris papulosa palmoplantar keratoderma, punctate type 1A punctate palmoplantar keratoderma type 1 allergic rhinitis colorectal adenoma erythrokeratoderma myocardial infarction pancreatic intraductal papillary-mucinous neoplasm thyroid gland carcinoma asthma colorectal cancer heart disease lung cancer osteoarthritis palmoplantar keratosis Keratosis palmoplantaris papulosa palmoplantar keratoderma, punctate type 1A punctate palmoplantar keratoderma type 1 allergic rhinitis colorectal adenoma erythrokeratoderma myocardial infarction pancreatic intraductal papillary-mucinous neoplasm thyroid gland carcinoma asthma colorectal cancer heart disease lung cancer osteoarthritis psoriasis astrocytic tumor Crohn disease inflammatory bowel disease mal de Meleda ovarian cancer pancreatic intraductal papillary-mucinous carcinoma
B	Pharos: Q96PC3	psoriasis pustulosis palmaris et plantaris psoriasis 15, pustular, susceptibility to tuberculosis Acrodermatitis continua of Hallopeau malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm spina bifida ulcerative colitis atopic eczema interstitial cystitis malignant pancreatic neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis pustulosis palmaris et plantaris psoriasis 15, pustular, susceptibility to tuberculosis Acrodermatitis continua of Hallopeau malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm spina bifida ulcerative colitis atopic eczema interstitial cystitis malignant pancreatic neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia transitional cell carcinoma atypical teratoid rhabdoid tumor large cell medulloblastoma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.