9GBF | pdb_00009gbf

X-RAY structure of PHDvC5HCH tandem domain of NSD2


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF17982NSD Cys-His rich domain (C5HCH)NSD Cys-His rich domainThis is an NSD-specific Cys-His rich region (C5HCH) domain. Family members include NSD3 (nuclear receptor SET domain-containing) proteins. This domain is located on the C-terminal of NSD1, 2 and 3 proteins. C5HCH domain lies adjacent to the fifth pla ...This is an NSD-specific Cys-His rich region (C5HCH) domain. Family members include NSD3 (nuclear receptor SET domain-containing) proteins. This domain is located on the C-terminal of NSD1, 2 and 3 proteins. C5HCH domain lies adjacent to the fifth plant homeodomain (PHD5). The PHD5-C5HCH module of NSD3 (PHD5-C5HCHNSD3) recognises the H3 N-terminal peptide containing unmodified K4 and trimethylated K9. Moreover, it has been reported that the PHD5-C5HCH module of NSD1 (PHD5-C5HCH) was the sole region required for tight binding of the NUP98-NSD1 fusion protein to the HoxA9 gene promoter, implicating that PHD5-C5HCH might have chromatin targeting ability [1].
Domain
A, B
PF23011Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 (PHD-1st_NSD)Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1This domain is found in the NSD (nuclear receptor SET domain- containing) family of histone-lysine N-methyltransferases such as NSD1, NSD2, NSD3 and other related proteins. The NSD family plays an important role in the chromatin integrity and disrupt ...This domain is found in the NSD (nuclear receptor SET domain- containing) family of histone-lysine N-methyltransferases such as NSD1, NSD2, NSD3 and other related proteins. The NSD family plays an important role in the chromatin integrity and disruption of the NSD protein folding or its expression in human cells has been linked to several diseases. The domain represented by this entry adopts a classical PHD finger fold and acts as a chromatin reader module.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Histone-lysine N-methyltransferase NSD2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001965Zinc finger, PHD-typeDomain
A, B
IPR046341SET domain superfamilyHomologous Superfamily
A, B
IPR047441Nuclear SET domain-containing protein 2, third PHD fingerDomain
A, B
IPR001214SET domainDomain
A, B
IPR000313PWWP domainDomain
A, B
IPR047426Histone-lysine N-methyltransferase NSD1 / NSD2, first PHD fingerDomain
A, B
IPR047442Nuclear SET domain-containing protein 2, fifth PHD fingerDomain
A, B
IPR003616Post-SET domainDomain
A, B
IPR055198Histone-lysine N-methyltransferase NSD-like, PHD zinc fingerDomain
A, B
IPR047434Nuclear SET domain-containing protein 2, first PWWP domainDomain
A, B
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
A, B
IPR001841Zinc finger, RING-typeDomain
A, B
IPR036910High mobility group box domain superfamilyHomologous Superfamily
A, B
IPR006560AWS domainDomain
A, B
IPR055197Histone-lysine N-methyltransferase NSD-like, variant PHD zinc fingerDomain
A, B
IPR041306NSD, Cys-His rich domainDomain
A, B
IPR050777SET2 Histone-Lysine N-MethyltransferaseFamily
A, B
IPR019787Zinc finger, PHD-fingerDomain
A, B
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
A, B
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
A, B
IPR047443Nuclear SET domain-containing protein 2, HMG boxDomain
A, B
IPR047437Nuclear SET domain-containing protein 2, SET domainDomain
A, B
IPR047439Nuclear SET domain-containing protein 2, second PHD fingerDomain
A, B
IPR047435Nuclear SET domain-containing protein 2, second PWWP domainDomain
A, B
IPR009071High mobility group box domainDomain