9HQV | pdb_00009hqv

Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth BC]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
D [auth BD]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
A [auth BA]PF16113Enoyl-CoA hydratase/isomerase (ECH_2)Enoyl-CoA hydratase/isomeraseThis family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's ...This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's C-terminus.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth BC]Pentatricopeptide repeat domain-containing protein- - -
D [auth BD]mS92- - -
E [auth Ba]Ribosomal protein, uS2m- - -
G [auth Bc]Putative mitochondrial ribosomal protein s6-2
H [auth Bd]Putative ribosomal protein S8
I [auth Be]Putative ribosomal protein S9
K [auth Bg]Putative ribosomal protein S11
L [auth Bh]Putative 30S ribosomal protein S12
M [auth Bi]us13m- - -
P [auth Bl]Putative 30S ribosomal protein S16
Q [auth Bm]Putative ribosomal protein S17
S [auth Bo]Ribosomal protein, bS21m- - -
U [auth Bq]Mitochondrial ribosomal protein, mS26- - -
W [auth Bs]DNA double-strand break repair rad50 ATPase- - -
X [auth Bt]mS34- - -
Y [auth Bu]Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein- - -
Z [auth Bv]CHCH domain-containing protein- - -
AA [auth Bx]Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein- - -
BA [auth By]Homeodomain-like containing protein- - -
CA [auth Bz]mS45- - -
DA [auth Ua]UNK1---
EA [auth Ub]UNK2---
FA [auth Uc]UNK3---
GA [auth Ud]UNK4---
HA [auth Uh]Chain Uh---
JA [auth Uj]Chain Uj---
LA [auth Ul]GLY-ARG-SER-LYS-VAL-LEU-ILE-ARG-ARG-LEU-LYS-GLU-ARG-ALA-LYS-LYS-GLU-ALA-GLU-LYS-LYS-ALA---
NA [auth Un]Chain Un---
OA [auth Uo]chain Uo---
PA [auth Up]chain Up---
QA [auth Uq]chain Uq---
TA [auth Yc]mS119- - -
UA [auth Yd]mS120- - -
VA [auth Ye]mS121- - -
WA [auth Yf]Macro domain-containing protein- - -
ZA [auth Yi]mS125- - -
AB [auth Yj]DnaJ domain-containing protein- - -
BB [auth Yk]RAP domain-containing protein- - -
DB [auth Ym]RAP domain-containing protein- - -
FB [auth Yo]mS131- - -
GB [auth Yp]mS132- - -
JB [auth Yt]mS136- - -
KB [auth Yu]mS137---
LB [auth Yq]mS133- - -
NB [auth SB]SSU-2---
OB [auth SC]SSU-3---
PB [auth SD]SSU-4---
QB [auth SE]SSU-5---
RB [auth SF]SSU-6---
SB [auth SG]SSU-7---
TB [auth SH]SSU-8---
UB [auth SI]SSU-9---
VB [auth SJ]SSU-10---
WB [auth SK]SSU-11---
XB [auth SL]SSU-12---
YB [auth SM]SSU-13---
ZB [auth SN]SSU-14---
AC [auth SO]SSU-15---
BC [auth SP]SSU-16---
DC [auth SR]SSU-18---
EC [auth SS]SSU-19---
FC [auth ST]SSU-20---
HC [auth TP]tRNA E-site---
IC [auth UC]Chain UC---
JC [auth Yv]mS138- - -
GC [auth SU]SSU-21---
CC [auth SQ]SSU-17---
MB [auth SA]SSU-1---
IB [auth Ys]mS135- - -
F [auth Bb]Putative 30S ribosomal protein S5
HB [auth Yr]Acylphosphatase-like domain-containing protein- - -
EB [auth Yn]AP2 domain transcription factor AP2IX-6- - -
CB [auth Yl]mS128- - -
YA [auth Yh]mS124- - -
XA [auth Yg]Thioredoxin domain-containing protein- - -
SA [auth Yb]ATP-dependent Clp protease proteolytic subunit,related protein- - -
RA [auth Ya]mS117- - -
MA [auth Um]ARG-ALA-GLU-LEU-VAL-ALA-ALA-GLN-VAL-ARG-GLU-LYS-LEU-ALA-ILE-LYS-MET-ALA-ASN-ALA-LEU-ALA---
IA [auth Ui],
KA [auth Uk]		Unknown peptide---
V [auth Br]Small ribosomal subunit protein mS29 -
T [auth Bp]mS23- - -
B [auth BB]mS75- - -
R [auth Bn]Putative ribosomal protein S18
O [auth Bk]Putative 30S ribosomal protein S15
N [auth Bj]Putative ribosomal protein S14- -
J [auth Bf]uS10m- - -
A [auth BA]Enoyl-CoA hydratase/isomerase family protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth Bc]IPR000529Small ribosomal subunit protein bS6Family
G [auth Bc]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
G [auth Bc]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
G [auth Bc]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
H [auth Bd]IPR000630Small ribosomal subunit protein uS8Family
H [auth Bd]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth Be]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth Be]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth Be]IPR000754Small ribosomal subunit protein uS9Family
I [auth Be]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth Bg]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
L [auth Bh]IPR006032Small ribosomal subunit protein uS12Family
L [auth Bh]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth Bh]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth Bi]IPR056356Microprotein, apicomplexa 17Family
P [auth Bl]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth Bl]IPR000307Small ribosomal subunit protein bS16Family
Q [auth Bm]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth Bm]IPR000266Small ribosomal subunit protein uS17Family
Y [auth Bu]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
BA [auth By]IPR009057Homedomain-like superfamilyHomologous Superfamily
WA [auth Yf]IPR043472Macro domain-likeHomologous Superfamily
WA [auth Yf]IPR002589Macro domainDomain
F [auth Bb]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth Bb]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth Bb]IPR014720Double-stranded RNA-binding domainDomain
F [auth Bb]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
HB [auth Yr]IPR001792Acylphosphatase-like domainDomain
V [auth Br]IPR019368Small ribosomal subunit protein mS29Family
R [auth Bn]IPR001648Small ribosomal subunit protein bS18Family
R [auth Bn]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
O [auth Bk]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
O [auth Bk]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth Bk]IPR000589Small ribosomal subunit protein uS15Family
A [auth BA]IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
A [auth BA]IPR045004Enoyl-CoA hydratase/isomerase domainDomain
A [auth BA]IPR052377Mitochondrial enoyl-CoA hydratase domain-containing proteinFamily