9I05 | pdb_00009i05

Cryo-EM structure of the large subunit of the mitochondrial ribosome from Toxoplasma gondii

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA	PF00181	Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)	Ribosomal Proteins L2, RNA binding N-terminal domain		Domain
AA	PF09809	Mitochondrial ribosomal protein L27 (MRP-L27)	Mitochondrial ribosomal protein L27	-	Family
CA [auth AC]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
DA [auth AD]	PF05046	Mitochondrial large subunit ribosomal protein (Img2) (Img2)	Mitochondrial large subunit ribosomal protein (Img2)	This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].	Domain
FA [auth AF]	PF03946	Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)	Ribosomal protein L11, N-terminal domain	The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.	Domain
FA [auth AF]	PF00298	Ribosomal protein L11, RNA binding domain (Ribosomal_L11)	Ribosomal protein L11, RNA binding domain		Domain
GA [auth AG]	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family
HA [auth AH]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e		Domain
IA [auth AI]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.	Domain
MB [auth XE]	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)	Ribosomal proteins 50S L24/mitochondrial 39S L24	-	Family
MB [auth XE]	PF00467	KOW motif (KOW)	KOW motif	-	Family
OB [auth XG]	PF20725	Domain of unknown function (DUF6832) (DUF6832)	Domain of unknown function (DUF6832)	This domain is functionally uncharacterised. It is predominantly found in eukaryotic sequences mostly from Alveolata. There are several highly conserved motifs: FGFNSFWS, FKxxxYD, PRxxY and YRC. Predictions of its structure suggest it folds into seve ...	This domain is functionally uncharacterised. It is predominantly found in eukaryotic sequences mostly from Alveolata. There are several highly conserved motifs: FGFNSFWS, FKxxxYD, PRxxY and YRC. Predictions of its structure suggest it folds into seven alpha helices.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Aa]	Putative LSU ribosomal protein L2P	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
B [auth Ab]	Large ribosomal subunit protein uL3m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
C [auth Ac]	Large ribosomal subunit protein uL4m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
D [auth Ad]	HECT-domain (Ubiquitin-transferase) domain-containing protein	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity	-	-
E [auth Ae]	Ribosomal protein L9, N-terminal domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
F [auth Af]	Putative ribosomal protein L11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
G [auth Ag]	Putative 50S ribosomal protein L13	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation regulation of cellular process negative regulation of biological process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
H [auth Ah]	Putative LSU ribosomal protein L14P	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
I [auth Ai]	Ribosomal protein L15, putative	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
J [auth Aj]	Putative 50S ribosomal protein L16	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
K [auth Ak]	Putative 50S ribosomal protein L17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
L [auth Al]	50S ribosomal protein L19, chloroplastic	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
M [auth Am]	Putative ribosomal protein L20	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
N [auth An]	Large ribosomal subunit protein bL21m	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
O [auth Ao]	Ribosomal L22p/L17e protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
P [auth Ap]	Large ribosomal subunit protein uL23m	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
Q [auth Aq]	Large ribosomal subunit protein uL24c	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
R [auth Ar]	Ribosomal l25 family protein	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit membrane
S [auth As]	bL27m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
T [auth At]	Putative ribosomal protein L28	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
U [auth Au]	Large ribosomal subunit protein uL29m	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
V [auth Av]	bL32m	-	-	-
W [auth Aw]	Putative 50S ribosomal protein L33	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
X [auth Ax]	bL35m	-	-	-
Y [auth Ay]	bL36m	-	-	-
Z [auth Az]	mL40	-	-	-
AA	Putative 60S ribosomal protein L27	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
BA [auth AB]	Large ribosomal subunit protein mL43	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
CA [auth AC]	Ribosomal protein L46	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
DA [auth AD]	Large ribosomal subunit protein mL49	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
EA [auth AE]	mL53	-	-	-
FA [auth AF]	Large ribosomal subunit protein mL54	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
GA [auth AG]	BIR protein	-	-	-
HA [auth AH]	mL102	-	-	-
IA [auth AI]	RAP domain-containing protein	-	-	-
JA [auth Xa]	mL130	-	-	-
KA [auth Xb]	RRM domain-containing protein	RNA binding binding nucleic acid binding	-	-
LA [auth Xc]	mL132	-	-	-
MA [auth Xd]	RAP domain-containing protein	-	-	-
NA [auth Xe]	Large ribosomal subunit protein uL24c	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
OA [auth Xf]	FAS1 domain-containing protein	-	-	-
PA [auth Xg]	DUF6832 domain-containing protein	-	-	-
QA [auth Xh]	RAP domain-containing protein	-	-	-
RA [auth Xi]	RAP domain-containing protein	-	-	-
SA [auth Xj]	RAP domain-containing protein	-	-	-
TA [auth Xk]	RNA recognition motif-containing protein	RNA binding binding nucleic acid binding	-	-
DB [auth Xv], UA [auth Xl]	RAP domain-containing protein	RNA binding binding nucleic acid binding	regulation of cellular process catabolic process negative regulation of biological process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process regulation of mRNA catabolic process negative regulation of cellular process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process regulation of cellular process catabolic process negative regulation of biological process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process regulation of mRNA catabolic process negative regulation of cellular process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process mRNA catabolic process regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound catabolic process regulation of mRNA stability regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of RNA stability nucleic acid catabolic process regulation of mitochondrial mRNA stability metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of mRNA metabolic process regulation of metabolic process mitochondrial gene expression nucleobase-containing compound biosynthetic process RNA biosynthetic process mitochondrial RNA processing nucleic acid biosynthetic process mitochondrial RNA metabolic process RNA processing	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle supramolecular complex ribonucleoprotein granule membrane-bounded organelle mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle supramolecular complex ribonucleoprotein granule membrane-bounded organelle mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen organelle lumen cytoplasm
VA [auth Xm]	Macro domain-containing protein	-	-	-
WA [auth Xn]	AP2 domain transcription factor AP2VIIb-2	-	-	-
XA [auth Xo]	mL144	-	-	-
YA [auth Xp]	Peptidyl-prolyl cis-trans isomerase	amide binding binding cyclosporin A binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure intracellular anatomical structure cytoplasm
ZA [auth Xq]	mL146	-	-	-
AB [auth Xr]	RAP domain-containing protein	-	-	-
BB [auth Xs]	mL149	-	-	-
CB [auth Xt]	mL148	-	-	-
EB [auth Xw]	Transmembrane protein	-	-	cellular anatomical structure membrane
FB [auth Xx]	mL152	-	-	-
GB [auth Xy]	mL153	-	-	-
HB [auth Xz]	AP2 domain transcription factor AP2IV-1	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
IB [auth XA]	mL155	-	-	-
JB [auth XB]	mL156	-	-	-
KB [auth XC]	mL157	-	-	-
LB [auth XD]	mL158	-	-	-
MB [auth XE]	mL159	-	-	-
NB [auth XF]	mL160	-	-	-
OB [auth XG]	mL161	-	-	-
PB [auth XH]	Ribosomal protein RPL22	-	-	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
QB [auth XI]	Transmembrane protein	-	-	cellular anatomical structure membrane
RB [auth XJ]	Chain Ua	-	-	-
SB [auth Ua]	Ribosomal l25 family protein	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit membrane
TB [auth Ub]	Chain Uc	-	-	-
UB [auth Uc]	Chain Ud	-	-	-
VB [auth Ud]	Chain Ue	-	-	-
WB [auth Ue]	Chain Uf	-	-	-
XB [auth Uf]	LSU-1	-	-	-
YB [auth RA]	LSU-2	-	-	-
ZB [auth RB]	LSU-3	-	-	-
AC [auth RC]	LSU-4	-	-	-
BC [auth RD]	LSU-5	-	-	-
CC [auth RE]	LSU-6	-	-	-
DC [auth RF]	LSU-7	-	-	-
EC [auth RG]	LSU-8	-	-	-
FC [auth RI]	LSU-9	-	-	-
GC [auth RJ]	LSU-10	-	-	-
HC [auth RK]	LSU-11	-	-	-
IC [auth RL]	LSU-12	-	-	-
JC [auth RM]	LSU-13	-	-	-
KC [auth RN]	LSU-14	-	-	-
LC [auth RO]	LSU-15	-	-	-
MC [auth RP]	LSU-16	-	-	-
NC [auth RQ]	LSU-17	-	-	-
OC [auth RS]	LSU-18	-	-	-
PC [auth RT]	LSU-19	-	-	-
QC [auth RU]	LSU-20	-	-	-
RC [auth RV]	LSU-21	-	-	-
SC [auth RW]	LSU-22	-	-	-
TC [auth RX]	LSU-23	-	-	-
UC [auth RY]	LSU-24	-	-	-
VC [auth RZ]	LSU-25	-	-	-
WC [auth Ra]	LSU-26	-	-	-
XC [auth Rb]	LSU-27	-	-	-
YC [auth Rc]	LSU-28	-	-	-
ZC [auth Rd]	LSU-29	-	-	-
AD [auth Rf]	LSU-30	-	-	-
BD [auth Rg]	LSU-31	-	-	-
CD [auth Rh]	LSU-32	-	-	-
DD [auth Ri]	LSU-32	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Aa]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
A [auth Aa]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A [auth Aa]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
A [auth Aa]	IPR005880	Large ribosomal subunit protein uL2, bacterial/organellar-type	Family
A [auth Aa]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A [auth Aa]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
A [auth Aa]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
A [auth Aa]	IPR002171	Large ribosomal subunit protein uL2	Family
B [auth Ab]	IPR019927	Large ribosomal subunit protein uL3, bacterial/organelle-type	Family
B [auth Ab]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
B [auth Ab]	IPR000597	Large ribosomal subunit protein uL3	Family
C [auth Ac]	IPR013005	Large ribosomal subunit protein uL4-like	Family
C [auth Ac]	IPR002136	Large ribosomal subunit protein uL4	Family
C [auth Ac]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
D [auth Ad]	IPR000569	HECT domain	Domain
D [auth Ad]	IPR043366	HECTD4	Family
D [auth Ad]	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
E [auth Ae]	IPR009027	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Homologous Superfamily
E [auth Ae]	IPR036935	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Homologous Superfamily
E [auth Ae]	IPR020070	Large ribosomal subunit protein bL9, N-terminal	Domain
E [auth Ae]	IPR000244	Large ribosomal subunit protein bL9	Family
F [auth Af]	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
F [auth Af]	IPR000911	Ribosomal protein uL11	Family
F [auth Af]	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
F [auth Af]	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
F [auth Af]	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
G [auth Ag]	IPR005822	Large ribosomal subunit protein uL13	Family
G [auth Ag]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
G [auth Ag]	IPR005823	Large ribosomal subunit protein uL13, bacterial-type	Family
H [auth Ah]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
H [auth Ah]	IPR000218	Large ribosomal subunit protein uL14	Family
H [auth Ah]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
I [auth Ai]	IPR005749	Large ribosomal subunit protein uL15, bacterial-type	Family
I [auth Ai]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
I [auth Ai]	IPR030878	Large ribosomal subunit protein uL15	Family
I [auth Ai]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
J [auth Aj]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
J [auth Aj]	IPR000114	Large ribosomal subunit protein uL16, bacterial-type	Family
J [auth Aj]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
J [auth Aj]	IPR047873	Large ribosomal subunit protein uL16	Family
K [auth Ak]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
K [auth Ak]	IPR000456	Large ribosomal subunit protein bL17	Family
L [auth Al]	IPR001857	Large ribosomal subunit protein bL19	Family
L [auth Al]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
L [auth Al]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
M [auth Am]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
M [auth Am]	IPR005813	Large ribosomal subunit protein bL20	Family
N [auth An]	IPR028909	Large ribosomal subunit protein bL21-like	Family
N [auth An]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
O [auth Ao]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
P [auth Ap]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
P [auth Ap]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
P [auth Ap]	IPR013025	Large ribosomal subunit protein uL23-like	Family
Q [auth Aq]	IPR003256	Large ribosomal subunit protein uL24	Family
Q [auth Aq]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
Q [auth Aq]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
Q [auth Aq]	IPR005824	KOW	Domain
Q [auth Aq]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
R [auth Ar]	IPR011035	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Homologous Superfamily
R [auth Ar]	IPR020930	Large ribosomal subunit protein uL5, bacterial-type	Family
S [auth As]	IPR001684	Large ribosomal subunit protein bL27	Family
T [auth At]	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
T [auth At]	IPR026569	Large ribosomal subunit protein bL28	Family
T [auth At]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
U [auth Au]	IPR038340	MRP-L47 superfamily, mitochondrial	Homologous Superfamily
U [auth Au]	IPR010729	Large ribosomal subunit protein uL29m, mitochondrial	Family
W [auth Aw]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
W [auth Aw]	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
W [auth Aw]	IPR001705	Large ribosomal subunit protein bL33	Family
AA	IPR019189	Large ribosomal subunit protein mL41	Family
BA [auth AB]	IPR007741	Ribosomal protein/NADH dehydrogenase domain	Domain
BA [auth AB]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
BA [auth AB]	IPR039927	Large ribosomal subunit protein mL43	Family
CA [auth AC]	IPR040008	Large ribosomal subunit protein mL46	Family
DA [auth AD]	IPR007740	Large ribosomal subunit protein mL49	Family
FA [auth AF]	IPR013870	Large ribosomal subunit protein mL54	Family
KA [auth Xb]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
KA [auth Xb]	IPR000504	RNA recognition motif domain	Domain
KA [auth Xb]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
NA [auth Xe]	IPR003256	Large ribosomal subunit protein uL24	Family
NA [auth Xe]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
NA [auth Xe]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
NA [auth Xe]	IPR005824	KOW	Domain
NA [auth Xe]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
OA [auth Xf]	IPR000782	FAS1 domain	Domain
OA [auth Xf]	IPR036378	FAS1 domain superfamily	Homologous Superfamily
PA [auth Xg]	IPR049235	Domain of unknown function DUF6832	Domain
RA [auth Xi]	IPR013584	RAP domain	Domain
TA [auth Xk]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
TA [auth Xk]	IPR000504	RNA recognition motif domain	Domain
TA [auth Xk]	IPR050666	Epithelial Splicing Regulatory	Family
TA [auth Xk]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
DB [auth Xv], UA [auth Xl]	IPR050870	FAST kinase domain-containing	Family
DB [auth Xv], UA [auth Xl]	IPR013584	RAP domain	Domain
VA [auth Xm]	IPR043472	Macro domain-like	Homologous Superfamily
VA [auth Xm]	IPR002589	Macro domain	Domain
XA [auth Xo]	IPR042099	ANL, N-terminal domain	Homologous Superfamily
YA [auth Xp]	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
YA [auth Xp]	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
YA [auth Xp]	IPR020892	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Conserved Site
AB [auth Xr]	IPR013584	RAP domain	Domain
HB [auth Xz]	IPR001471	AP2/ERF domain	Domain
IB [auth XA]	IPR056347	Microprotein, apicomplexa 8	Family
JB [auth XB]	IPR056349	Microprotein, apicomplexa 10	Family
SB [auth Ua]	IPR011035	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Homologous Superfamily
SB [auth Ua]	IPR020930	Large ribosomal subunit protein uL5, bacterial-type	Family