9I05 | pdb_00009i05

Cryo-EM structure of the large subunit of the mitochondrial ribosome from Toxoplasma gondii


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
CA [auth AC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DA [auth AD]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1]. Domain
FA [auth AF]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
FA [auth AF]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
GA [auth AG]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
HA [auth AH]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
IA [auth AI]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
MB [auth XE]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
MB [auth XE]PF00467KOW motif (KOW)KOW motif- Family
OB [auth XG]PF20725Domain of unknown function (DUF6832) (DUF6832)Domain of unknown function (DUF6832)This domain is functionally uncharacterised. It is predominantly found in eukaryotic sequences mostly from Alveolata. There are several highly conserved motifs: FGFNSFWS, FKxxxYD, PRxxY and YRC. Predictions of its structure suggest it folds into seve ...This domain is functionally uncharacterised. It is predominantly found in eukaryotic sequences mostly from Alveolata. There are several highly conserved motifs: FGFNSFWS, FKxxxYD, PRxxY and YRC. Predictions of its structure suggest it folds into seven alpha helices.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth Aa]Putative LSU ribosomal protein L2P
B [auth Ab]Large ribosomal subunit protein uL3m
C [auth Ac]Large ribosomal subunit protein uL4m
D [auth Ad]HECT-domain (Ubiquitin-transferase) domain-containing protein - -
E [auth Ae]Ribosomal protein L9, N-terminal domain-containing protein
F [auth Af]Putative ribosomal protein L11
G [auth Ag]Putative 50S ribosomal protein L13
H [auth Ah]Putative LSU ribosomal protein L14P
I [auth Ai]Ribosomal protein L15, putative
J [auth Aj]Putative 50S ribosomal protein L16
K [auth Ak]Putative 50S ribosomal protein L17
L [auth Al]50S ribosomal protein L19, chloroplastic
M [auth Am]Putative ribosomal protein L20
N [auth An]Large ribosomal subunit protein bL21m -
O [auth Ao]Ribosomal L22p/L17e protein
P [auth Ap]Large ribosomal subunit protein uL23m
Q [auth Aq]Large ribosomal subunit protein uL24c
R [auth Ar]Ribosomal l25 family protein
S [auth As]bL27m
T [auth At]Putative ribosomal protein L28 -
U [auth Au]Large ribosomal subunit protein uL29m
V [auth Av]bL32m- - -
W [auth Aw]Putative 50S ribosomal protein L33
X [auth Ax]bL35m- - -
Y [auth Ay]bL36m- - -
Z [auth Az]mL40- - -
Putative 60S ribosomal protein L27
BA [auth AB]Large ribosomal subunit protein mL43
CA [auth AC]Ribosomal protein L46 -
DA [auth AD]Large ribosomal subunit protein mL49
EA [auth AE]mL53- - -
FA [auth AF]Large ribosomal subunit protein mL54 -
GA [auth AG]BIR protein- - -
HA [auth AH]mL102- - -
IA [auth AI]RAP domain-containing protein- - -
JA [auth Xa]mL130- - -
KA [auth Xb]RRM domain-containing protein - -
LA [auth Xc]mL132- - -
MA [auth Xd]RAP domain-containing protein- - -
NA [auth Xe]Large ribosomal subunit protein uL24c
OA [auth Xf]FAS1 domain-containing protein- - -
PA [auth Xg]DUF6832 domain-containing protein- - -
QA [auth Xh]RAP domain-containing protein- - -
RA [auth Xi]RAP domain-containing protein- - -
SA [auth Xj]RAP domain-containing protein- - -
TA [auth Xk]RNA recognition motif-containing protein - -
DB [auth Xv],
UA [auth Xl]
RAP domain-containing protein
VA [auth Xm]Macro domain-containing protein- - -
WA [auth Xn]AP2 domain transcription factor AP2VIIb-2- - -
XA [auth Xo]mL144- - -
YA [auth Xp]Peptidyl-prolyl cis-trans isomerase
ZA [auth Xq]mL146- - -
AB [auth Xr]RAP domain-containing protein- - -
BB [auth Xs]mL149- - -
CB [auth Xt]mL148- - -
EB [auth Xw]Transmembrane protein- -
FB [auth Xx]mL152- - -
GB [auth Xy]mL153- - -
HB [auth Xz]AP2 domain transcription factor AP2IV-1 -
IB [auth XA]mL155- - -
JB [auth XB]mL156- - -
KB [auth XC]mL157- - -
LB [auth XD]mL158- - -
MB [auth XE]mL159- - -
NB [auth XF]mL160- - -
OB [auth XG]mL161- - -
PB [auth XH]Ribosomal protein RPL22- -
QB [auth XI]Transmembrane protein- -
RB [auth XJ]Chain Ua---
SB [auth Ua]Ribosomal l25 family protein
TB [auth Ub]Chain Uc---
UB [auth Uc]Chain Ud---
VB [auth Ud]Chain Ue---
WB [auth Ue]Chain Uf---
XB [auth Uf]LSU-1---
YB [auth RA]LSU-2---
ZB [auth RB]LSU-3---
AC [auth RC]LSU-4---
BC [auth RD]LSU-5---
CC [auth RE]LSU-6---
DC [auth RF]LSU-7---
EC [auth RG]LSU-8---
FC [auth RI]LSU-9---
GC [auth RJ]LSU-10---
HC [auth RK]LSU-11---
IC [auth RL]LSU-12---
JC [auth RM]LSU-13---
KC [auth RN]LSU-14---
LC [auth RO]LSU-15---
MC [auth RP]LSU-16---
NC [auth RQ]LSU-17---
OC [auth RS]LSU-18---
PC [auth RT]LSU-19---
QC [auth RU]LSU-20---
RC [auth RV]LSU-21---
SC [auth RW]LSU-22---
TC [auth RX]LSU-23---
UC [auth RY]LSU-24---
VC [auth RZ]LSU-25---
WC [auth Ra]LSU-26---
XC [auth Rb]LSU-27---
YC [auth Rc]LSU-28---
ZC [auth Rd]LSU-29---
AD [auth Rf]LSU-30---
BD [auth Rg]LSU-31---
CD [auth Rh]LSU-32---
DD [auth Ri]LSU-32---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth Aa]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
A [auth Aa]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth Aa]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
A [auth Aa]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
A [auth Aa]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth Aa]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
A [auth Aa]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
A [auth Aa]IPR002171Large ribosomal subunit protein uL2Family
B [auth Ab]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
B [auth Ab]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth Ab]IPR000597Large ribosomal subunit protein uL3Family
C [auth Ac]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth Ac]IPR002136Large ribosomal subunit protein uL4Family
C [auth Ac]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth Ad]IPR000569HECT domainDomain
D [auth Ad]IPR043366HECTD4Family
D [auth Ad]IPR035983HECT, E3 ligase catalytic domainHomologous Superfamily
E [auth Ae]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
E [auth Ae]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
E [auth Ae]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
E [auth Ae]IPR000244Large ribosomal subunit protein bL9Family
F [auth Af]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
F [auth Af]IPR000911Ribosomal protein uL11Family
F [auth Af]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
F [auth Af]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
F [auth Af]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
G [auth Ag]IPR005822Large ribosomal subunit protein uL13Family
G [auth Ag]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth Ag]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
H [auth Ah]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth Ah]IPR000218Large ribosomal subunit protein uL14Family
H [auth Ah]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
I [auth Ai]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
I [auth Ai]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth Ai]IPR030878Large ribosomal subunit protein uL15Family
I [auth Ai]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
J [auth Aj]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
J [auth Aj]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
J [auth Aj]IPR016180Large ribosomal subunit protein uL16 domainDomain
J [auth Aj]IPR047873Large ribosomal subunit protein uL16Family
K [auth Ak]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
K [auth Ak]IPR000456Large ribosomal subunit protein bL17Family
L [auth Al]IPR001857Large ribosomal subunit protein bL19Family
L [auth Al]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
L [auth Al]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth Am]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
M [auth Am]IPR005813Large ribosomal subunit protein bL20Family
N [auth An]IPR028909Large ribosomal subunit protein bL21-likeFamily
N [auth An]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
O [auth Ao]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
P [auth Ap]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth Ap]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
P [auth Ap]IPR013025Large ribosomal subunit protein uL23-likeFamily
Q [auth Aq]IPR003256Large ribosomal subunit protein uL24Family
Q [auth Aq]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Q [auth Aq]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth Aq]IPR005824KOWDomain
Q [auth Aq]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Ar]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
R [auth Ar]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
S [auth As]IPR001684Large ribosomal subunit protein bL27Family
T [auth At]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
T [auth At]IPR026569Large ribosomal subunit protein bL28Family
T [auth At]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
U [auth Au]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
U [auth Au]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
W [auth Aw]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
W [auth Aw]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
W [auth Aw]IPR001705Large ribosomal subunit protein bL33Family
IPR019189Large ribosomal subunit protein mL41Family
BA [auth AB]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
BA [auth AB]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
BA [auth AB]IPR039927Large ribosomal subunit protein mL43Family
CA [auth AC]IPR040008Large ribosomal subunit protein mL46Family
DA [auth AD]IPR007740Large ribosomal subunit protein mL49Family
FA [auth AF]IPR013870Large ribosomal subunit protein mL54Family
KA [auth Xb]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
KA [auth Xb]IPR000504RNA recognition motif domainDomain
KA [auth Xb]IPR035979RNA-binding domain superfamilyHomologous Superfamily
NA [auth Xe]IPR003256Large ribosomal subunit protein uL24Family
NA [auth Xe]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
NA [auth Xe]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth Xe]IPR005824KOWDomain
NA [auth Xe]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth Xf]IPR000782FAS1 domainDomain
OA [auth Xf]IPR036378FAS1 domain superfamilyHomologous Superfamily
PA [auth Xg]IPR049235Domain of unknown function DUF6832Domain
RA [auth Xi]IPR013584RAP domainDomain
TA [auth Xk]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
TA [auth Xk]IPR000504RNA recognition motif domainDomain
TA [auth Xk]IPR050666Epithelial Splicing RegulatoryFamily
TA [auth Xk]IPR035979RNA-binding domain superfamilyHomologous Superfamily
DB [auth Xv],
UA [auth Xl]
IPR050870FAST kinase domain-containingFamily
DB [auth Xv],
UA [auth Xl]
IPR013584RAP domainDomain
VA [auth Xm]IPR043472Macro domain-likeHomologous Superfamily
VA [auth Xm]IPR002589Macro domainDomain
XA [auth Xo]IPR042099ANL, N-terminal domainHomologous Superfamily
YA [auth Xp]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
YA [auth Xp]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
YA [auth Xp]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
AB [auth Xr]IPR013584RAP domainDomain
HB [auth Xz]IPR001471AP2/ERF domainDomain
IB [auth XA]IPR056347Microprotein, apicomplexa 8Family
JB [auth XB]IPR056349Microprotein, apicomplexa 10Family
SB [auth Ua]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
SB [auth Ua]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily