EF-G2 bound 50S ribosome subunit complex of M. smegmatis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F [auth D] | SCOP2B Superfamily | Translational proteins | 8089146 | 3000811 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8080698 | 3001146 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | RL5-like | 8073880 | 3001709 | SCOP2B (2022-06-29) |
M [auth K] | SCOP2B Superfamily | Ribosomal protein L13 | 8066067 | 3001134 | SCOP2B (2022-06-29) |
N [auth L] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072026 | 3000433 | SCOP2B (2022-06-29) |
O [auth M] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070563 | 3001045 | SCOP2B (2022-06-29) |
P [auth N] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076049 | 3000884 | SCOP2B (2022-06-29) |
Q [auth O] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089012 | 3000995 | SCOP2B (2022-06-29) |
S [auth Q] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082427 | 3000334 | SCOP2B (2022-06-29) |
T [auth R] | SCOP2B Superfamily | Ribosomal protein L20 | 8075008 | 3000563 | SCOP2B (2022-06-29) |
U [auth S] | SCOP2B Superfamily | l21p-like | 8082445 | 3002005 | SCOP2B (2022-06-29) |
V [auth T] | SCOP2B Superfamily | Ribosomal protein L22 | 8081516 | 3001078 | SCOP2B (2022-06-29) |
W [auth U] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077101 | 3000210 | SCOP2B (2022-06-29) |
X [auth V] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082509 | 3000334 | SCOP2B (2022-06-29) |
Y [auth W] | SCOP2B Superfamily | Ribosomal protein L25-like | 8082279 | 3001161 | SCOP2B (2022-06-29) |
Z [auth X] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8075032 | 3000539 | SCOP2B (2022-06-29) |
AA [auth Y] | SCOP2B Superfamily | L28p-like | 8089398 | 3001966 | SCOP2B (2022-06-29) |
BA [auth Z] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8080678 | 3000713 | SCOP2B (2022-06-29) |
CA [auth a] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8076279 | 3001378 | SCOP2B (2022-06-29) |
EA [auth c] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8075054 | 3001320 | SCOP2B (2022-06-29) |
GA [auth e] | SCOP2B Superfamily | L35p-like | 8083338 | 3000790 | SCOP2B (2022-06-29) |
HA [auth f] | SCOP2B Superfamily | Ribosomal protein L36 | 8083308 | 3001346 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth 5], C [auth 6] | PF00679 | Elongation factor G C-terminus (EFG_C) | Elongation factor G C-terminus | This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. | Domain |
B [auth 5], C [auth 6] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
B [auth 5], C [auth 6] | PF14492 | Elongation Factor G, domain III (EFG_III) | Elongation Factor G, domain III | This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. | Domain |
B [auth 5], C [auth 6] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
B [auth 5], C [auth 6] | PF03764 | Elongation factor G, domain IV (EFG_IV) | Elongation factor G, domain IV | This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. | Domain |
D [auth B] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
E [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
E [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
E [auth C] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
F [auth D] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
F [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
G [auth E] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
G [auth E] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
H [auth F] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
H [auth F] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
H [auth F] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
I [auth G] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
I [auth G] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
J [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
J [auth H] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
K [auth I] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
L [auth J] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
L [auth J] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
M [auth K] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
N [auth L] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
O [auth M] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
P [auth N] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
Q [auth O] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
R [auth P] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
S [auth Q] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
T [auth R] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
U [auth S] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
V [auth T] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
W [auth U] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
X [auth V] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
X [auth V] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
Y [auth W] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
Y [auth W] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
AA [auth Y] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
BA [auth Z] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
JA [auth A] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |