EF-G2 bound 50S ribosome subunit complex of M. smegmatis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth F] | SCOP2B Superfamily | RL5-like | 8073880 | 3001709 | SCOP2B (2022-06-29) |
| G [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8080698 | 3001146 | SCOP2B (2022-06-29) |
| F [auth D] | SCOP2B Superfamily | Translational proteins | 8089146 | 3000811 | SCOP2B (2022-06-29) |
| HA [auth f] | SCOP2B Superfamily | Ribosomal protein L36 | 8083308 | 3001346 | SCOP2B (2022-06-29) |
| GA [auth e] | SCOP2B Superfamily | L35p-like | 8083338 | 3000790 | SCOP2B (2022-06-29) |
| EA [auth c] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8075054 | 3001320 | SCOP2B (2022-06-29) |
| CA [auth a] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8076279 | 3001378 | SCOP2B (2022-06-29) |
| BA [auth Z] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8080678 | 3000713 | SCOP2B (2022-06-29) |
| AA [auth Y] | SCOP2B Superfamily | L28p-like | 8089398 | 3001966 | SCOP2B (2022-06-29) |
| Z [auth X] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8075032 | 3000539 | SCOP2B (2022-06-29) |
| Y [auth W] | SCOP2B Superfamily | Ribosomal protein L25-like | 8082279 | 3001161 | SCOP2B (2022-06-29) |
| X [auth V] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082509 | 3000334 | SCOP2B (2022-06-29) |
| W [auth U] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077101 | 3000210 | SCOP2B (2022-06-29) |
| V [auth T] | SCOP2B Superfamily | Ribosomal protein L22 | 8081516 | 3001078 | SCOP2B (2022-06-29) |
| U [auth S] | SCOP2B Superfamily | l21p-like | 8082445 | 3002005 | SCOP2B (2022-06-29) |
| T [auth R] | SCOP2B Superfamily | Ribosomal protein L20 | 8075008 | 3000563 | SCOP2B (2022-06-29) |
| S [auth Q] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082427 | 3000334 | SCOP2B (2022-06-29) |
| Q [auth O] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089012 | 3000995 | SCOP2B (2022-06-29) |
| P [auth N] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076049 | 3000884 | SCOP2B (2022-06-29) |
| O [auth M] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070563 | 3001045 | SCOP2B (2022-06-29) |
| N [auth L] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072026 | 3000433 | SCOP2B (2022-06-29) |
| M [auth K] | SCOP2B Superfamily | Ribosomal protein L13 | 8066067 | 3001134 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| J [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| J [auth H] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| I [auth G] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| I [auth G] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
| H [auth F] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| H [auth F] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| H [auth F] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| G [auth E] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| G [auth E] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| F [auth D] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| F [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| E [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| E [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| E [auth C] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| JA [auth A] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| D [auth B] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| BA [auth Z] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| AA [auth Y] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| Y [auth W] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
| Y [auth W] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| X [auth V] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| X [auth V] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| W [auth U] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| V [auth T] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| U [auth S] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| B [auth 5], C [auth 6] | PF00679 | Elongation factor G C-terminus (EFG_C) | Elongation factor G C-terminus | This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. | Domain |
| B [auth 5], C [auth 6] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| B [auth 5], C [auth 6] | PF14492 | Elongation Factor G, domain III (EFG_III) | Elongation Factor G, domain III | This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. | Domain |
| B [auth 5], C [auth 6] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
| B [auth 5], C [auth 6] | PF03764 | Elongation factor G, domain IV (EFG_IV) | Elongation factor G, domain IV | This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. | Domain |
| T [auth R] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| S [auth Q] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| R [auth P] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| Q [auth O] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| P [auth N] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| O [auth M] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| N [auth L] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| M [auth K] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| L [auth J] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| L [auth J] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| K [auth I] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |














