1NL7 | pdb_00001nl7

Z. ramigera biosynthetic thiolase, acetylated enzyme complexed with CoA at pH 9.5

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1M3K

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	295	lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K

Crystal Properties
Matthews coefficient	Solvent content
2.79	55.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 84.374	α = 90
b = 79.059	β = 92.58
c = 148.881	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2002-04-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX II BEAMLINE I711	1.1920	MAX II	I711

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.903	30	96.6	0.089	8.1	2.895		149016		-3	27

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.903	2	84.6		0.297	2.4	2.07	9684

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1M3K	1.903	20	142241	142241	6714	97.18	0.18147	0.18147	0.1795	0.19	0.22269	0.23	COPIED FROM 1M3K	17.405

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.92			-1.34		2.26

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.676
r_scangle_it	3.392
r_mcangle_it	2.751
r_scbond_it	2.376
r_mcbond_it	1.983
r_angle_refined_deg	1.681
r_angle_other_deg	0.915
r_symmetry_hbond_refined	0.265
r_symmetry_vdw_other	0.256
r_nbd_other	0.251
r_xyhbond_nbd_refined	0.233
r_nbd_refined	0.23
r_symmetry_vdw_refined	0.202
r_chiral_restr	0.117
r_nbtor_other	0.088
r_bond_refined_d	0.019
r_gen_planes_refined	0.008
r_gen_planes_other	0.005
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11292
Nucleic Acid Atoms
Solvent Atoms	1275
Heterogen Atoms	116

Software

Software
Software Name	Purpose
XDS	data scaling
XDS	data reduction
REFMAC	refinement