1Y1H | pdb_00001y1h

human formylglycine generating enzyme, oxidised Cys refined as hydroperoxide

X-RAY DIFFRACTION

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Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.12	41.94

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.693	α = 90
b = 110.334	β = 90
c = 43.458	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.67	55.13	89.8	0.049	32.5	3.6		32268

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.67	1.72	32.9		0.131	4.5	1.7	1167

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.67	29.9	30652	1578	91.09	0.14759	0.14616	0.1575	0.17568	0.1871	RANDOM	14.893

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.02			0.49		-0.47

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.661
r_dihedral_angle_4_deg	16.246
r_dihedral_angle_3_deg	12.634
r_dihedral_angle_1_deg	6.525
r_scangle_it	3.01
r_scbond_it	1.893
r_angle_refined_deg	1.33
r_mcangle_it	1.323
r_angle_other_deg	0.918
r_mcbond_it	0.734
r_symmetry_vdw_refined	0.233
r_nbd_refined	0.217
r_nbd_other	0.196
r_nbtor_refined	0.185
r_symmetry_hbond_refined	0.176
r_mcbond_other	0.176
r_symmetry_vdw_other	0.173
r_xyhbond_nbd_refined	0.168
r_metal_ion_refined	0.11
r_chiral_restr	0.097
r_nbtor_other	0.082
r_bond_refined_d	0.01
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2182
Nucleic Acid Atoms
Solvent Atoms	473
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement