1Y1J | pdb_00001y1j

human formylglycine generating enzyme, sulfonic acid/desulfurated form

X-RAY DIFFRACTION

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Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.12	41.99

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 62.18	α = 90
b = 109.655	β = 90
c = 43.484	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.55	54.88	80.7	0.043	26.5	2.6		35522

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.55	1.61	19.1		0.162	3.3	1.25	820

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.55	41.1	33756	1722	81.21	0.1597	0.15803	0.1601	0.19301	0.1953	RANDOM	13.348

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.18			0.43		-0.61

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.726
r_dihedral_angle_4_deg	17.209
r_dihedral_angle_3_deg	12.836
r_dihedral_angle_1_deg	6.475
r_scangle_it	2.737
r_scbond_it	1.825
r_angle_refined_deg	1.341
r_mcangle_it	1.206
r_angle_other_deg	0.795
r_mcbond_it	0.784
r_symmetry_hbond_refined	0.223
r_nbd_refined	0.203
r_nbd_other	0.195
r_symmetry_vdw_refined	0.191
r_symmetry_vdw_other	0.188
r_mcbond_other	0.187
r_nbtor_refined	0.186
r_xyhbond_nbd_refined	0.165
r_nbtor_other	0.083
r_chiral_restr	0.079
r_metal_ion_refined	0.078
r_bond_refined_d	0.01
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2180
Nucleic Acid Atoms
Solvent Atoms	471
Heterogen Atoms	44

Software

Software
Software Name	Purpose
REFMAC	refinement