1ZJY | pdb_00001zjy

Structure of R-specific alcohol dehydrogenase (mutant G37D) from Lactobacillus brevis in complex with phenylethanol and NADH

X-RAY DIFFRACTION

---

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.37

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 55.56	α = 90
b = 79.614	β = 90
c = 112.912	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29	0.9155	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.05	35.5				108778	108778

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.05	35.5	108778	104390	4388	93.64	0.13874	0.13874	0.13816	0.15	0.15215	0.15	RANDOM	12.965

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.24			-0.05		-0.18

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.31
r_sphericity_free	5.899
r_sphericity_bonded	4.343
r_scangle_it	3.971
r_scbond_it	2.786
r_mcangle_it	2.103
r_angle_refined_deg	1.876
r_angle_other_deg	1.565
r_rigid_bond_restr	1.554
r_mcbond_it	1.491
r_symmetry_vdw_refined	0.435
r_symmetry_vdw_other	0.296
r_nbd_other	0.26
r_nbd_refined	0.234
r_xyhbond_nbd_refined	0.218
r_symmetry_hbond_refined	0.2
r_nbtor_other	0.105
r_chiral_restr	0.102
r_gen_planes_refined	0.03
r_bond_refined_d	0.018
r_gen_planes_other	0.018
r_bond_other_d	0.008
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1875
Nucleic Acid Atoms
Solvent Atoms	375
Heterogen Atoms	54

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
CNS	phasing