29TM | pdb_000029tm

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6BA4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	PEG, HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.52	51.11

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2019-06-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.0332	PETRA III, DESY	P11

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	43.07	98.8	0.075	0.085	0.999	12.7	4.4		36622			30.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.8	96.7		0.907	1.029	0.695	1.5	4.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.7	43.07	36621	1831	98.815	0.179	0.1775	0.1888	0.214	0.2277	33.195

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.661			-0.125		0.786

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.765
r_dihedral_angle_4_deg	17.372
r_dihedral_angle_3_deg	14.946
r_lrange_other	10.093
r_lrange_it	10.091
r_dihedral_angle_1_deg	7
r_scangle_it	6.373
r_scangle_other	6.371
r_mcangle_it	4.348
r_mcangle_other	4.348

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.765
r_dihedral_angle_4_deg	17.372
r_dihedral_angle_3_deg	14.946
r_lrange_other	10.093
r_lrange_it	10.091
r_dihedral_angle_1_deg	7
r_scangle_it	6.373
r_scangle_other	6.371
r_mcangle_it	4.348
r_mcangle_other	4.348
r_scbond_it	4.32
r_scbond_other	4.318
r_mcbond_it	2.852
r_mcbond_other	2.85
r_angle_refined_deg	1.832
r_angle_other_deg	1.427
r_nbd_refined	0.222
r_symmetry_xyhbond_nbd_refined	0.215
r_symmetry_nbd_other	0.183
r_nbtor_refined	0.182
r_nbd_other	0.177
r_xyhbond_nbd_refined	0.174
r_symmetry_nbd_refined	0.144
r_chiral_restr	0.104
r_symmetry_nbtor_other	0.084
r_bond_refined_d	0.014
r_gen_planes_refined	0.012
r_xyhbond_nbd_other	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2253
Nucleic Acid Atoms
Solvent Atoms	302
Heterogen Atoms	37

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.