2CFW | pdb_00002cfw

AGAO in complex with wc7a (Ru-wire inhibitor, 7-carbon linker, data set a)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7		THE CRYSTAL WAS GROWN BY HANGING DROP OVER 150 MM CITRATE PH 7.0, 900 MM NH4SO4. THE INHIBITOR WAS ADDED BY SOAKING. A STOICHIOMETRIC EXCESS OF WIRE-INHIBITOR WAS USED, ADDED TO THE RESERVOIR. GLYCEROL WAS THEN, ADDED IN 2-3% INCREMENTS, TO THE RESERVOIR, WITH THE NEW RESERVOIR SOLUTION SUBSTITUTING THE DROP SOLUTION. THE FINAL GLYCEROL CONCENTRATION WAS 30%.

Crystal Properties
Matthews coefficient	Solvent content
3.25	62.14

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 158.049	α = 90
b = 62.744	β = 112.1
c = 92.064	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	MARRESEARCH	OSMIC MIRRORS	2004-05-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU RU200

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.73	30	92.2	0.04	22.75	3.955		317790		-3	22.39

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.73	1.79	79.1		0.23	4.22	3.62

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.74	25.85	76355	3988	92.9	0.161	0.161	0.1638	0.176	0.1799	RANDOM	22.87

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.94		0.02	1.63		-0.68

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.288
r_scangle_it	3.081
r_scbond_it	1.852
r_angle_refined_deg	1.473
r_mcangle_it	1.233
r_angle_other_deg	0.86
r_mcbond_it	0.663
r_symmetry_vdw_other	0.298
r_nbd_other	0.25
r_nbd_refined	0.22
r_symmetry_hbond_refined	0.161
r_symmetry_vdw_refined	0.15
r_xyhbond_nbd_refined	0.126
r_chiral_restr	0.086
r_nbtor_other	0.082
r_bond_refined_d	0.01
r_bond_other_d	0.01
r_gen_planes_refined	0.005
r_gen_planes_other	0.001
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4868
Nucleic Acid Atoms
Solvent Atoms	375
Heterogen Atoms	105

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling