2G4I | pdb_00002g4i

Anomalous substructure of Concanavalin A

X-RAY DIFFRACTION

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Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.29	46.24

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.64	α = 90
b = 86.05	β = 90
c = 88.45	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2005-01-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE X12	2.00	EMBL/DESY, HAMBURG	X12

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	30					9510

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	THROUGHOUT	2.4	30	9332	178	99.93	0.19294	0.19169	0.2	0.25983	RANDOM	36.369

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.22			-0.84		-4.39

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.883
r_dihedral_angle_4_deg	23.571
r_dihedral_angle_3_deg	16.01
r_dihedral_angle_1_deg	8.462
r_scangle_it	5.311
r_scbond_it	3.51
r_angle_refined_deg	1.575
r_mcangle_it	1.417
r_angle_other_deg	1.008
r_mcbond_it	0.694
r_symmetry_hbond_refined	0.292
r_nbd_other	0.198
r_symmetry_vdw_other	0.194
r_nbd_refined	0.185
r_symmetry_vdw_refined	0.17
r_nbtor_refined	0.163
r_metal_ion_refined	0.146
r_xyhbond_nbd_refined	0.142
r_mcbond_other	0.111
r_chiral_restr	0.105
r_nbtor_other	0.085
r_bond_refined_d	0.018
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1809
Nucleic Acid Atoms
Solvent Atoms	26
Heterogen Atoms	6

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
CCP4	data scaling
FFT	phasing