Solution structure of acyl carrier protein domain from module 2 of 6-deoxyerythronolide B synthase (DEBS)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| 2 | 3D 1H-13C/15N NOESY | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| 3 | 3D HCCH-TOCSY | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| 4 | 3D HNHA | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| 5 | 2D 1H-15N HSQC | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| 6 | 3D HNCACB | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| 7 | 3D C(CO)NH | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 800 |
| 2 | Varian | INOVA | 500 |
| 3 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, torsion angle dynamics | The standard simulated annealing protocol included as part of DYANA software was used with 4000 steps per structure. | DYANA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 30 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | DYANA | 1.5 | Guntert, P. et al. |
| 2 | refinement | DYANA | 1.5 | Guntert, P. et al. |














