Solution NMR structure of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1). Northeast Structural Genomics Consortium target HR41
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 | 95% H2O/5% D2O | na | 6.5 | ambient | 298 | |
| 2 | SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY | 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 | 95% H2O/5% D2O | na | 6.5 | ambient | 298 | |
| 3 | GFT (4,3)D HNNCABCA | 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 | 95% H2O/5% D2O | na | 6.5 | ambient | 298 | |
| 4 | GFT (4,3)D CABCA(CO)NHN | 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 | 95% H2O/5% D2O | na | 6.5 | ambient | 298 | |
| 5 | GFT (4,3)D HABCAB(CO)NHN | 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 | 95% H2O/5% D2O | na | 6.5 | ambient | 298 | |
| 6 | GFT (4,3) HCCH | 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 | 95% H2O/5% D2O | na | 6.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 750 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics, simulated annealing, distance geometry, torsion angle dynamics | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 2 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 3 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 4 | data analysis | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 5 | data analysis | AutoStructure | 2.2.1 | Huang, Tejero, Powers and Montelione |
| 6 | peak picking | AutoStructure | 2.2.1 | Huang, Tejero, Powers and Montelione |
| 7 | chemical shift assignment | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
| 8 | data analysis | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
| 9 | chemical shift assignment | XEASY | 1.3.1.3 | Bartels et al. |
| 10 | data analysis | XEASY | 1.3.1.3 | Bartels et al. |
| 11 | peak picking | XEASY | 1.3.1.3 | Bartels et al. |
| 12 | processing | NMRPipe | 2.3 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 13 | collection | VNMR | Varian | |
