2L3R | pdb_00002l3r

NMR structure of UHRF1 Tandem Tudor Domains in a complex with Histone H3 peptide

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
2	2D 1H-13C HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
3	3D CBCA(CO)NH	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
4	3D HNCO	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
5	3D HNCA	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
6	3D HBHA(CO)NH	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
7	3D HCCH-TOCSY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
8	3D 1H-15N NOESY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
9	3D 1H-13C NOESY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
10	Aro-NOESY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
11	Aro-2D-1H-13C HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
12	Aro-3D-TOCSY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
13	2D-TOCSY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
14	3D-Edited-15N/13C NOESY	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
15	IPAP-15N-1H HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
16	J-evolution-13CO-13CA	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
17	J-evolution-15N-13CO	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O	250	7	1 ambient	298
18	IPAP-15N-1H HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O
19	IPAP-15N-1H HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O
20	IPAP-15N-1H HSQC	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O
21	J-evolution-13CO-13CA	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O
22	J-evolution-15N-13CO	0.6 mM [U-100% 15N] protein, 0.6 mM [U-100% 13C] protein, 3 mM protein	90% H2O/10% D2O

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	600
3	Varian	INOVA	600

NMR Refinement
Method	Details	Software
molecular dynamics		ABACUS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	15
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	ABACUS		Lemak
2	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
5	peak picking	Sparky		Goddard
6	processing	FuDA		Flemming Hansen
7	geometry optimization	TALOS		Cornilescu, Delaglio and Bax