Solution structure of the Aha1 dimer from Colwellia psychrerythraea
SOLUTION NMR - SOLUTION SCATTERING
| NMR Experiment |
|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
|---|
| 1 | 2D 1H-15N HSQC | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 2 | 2D 1H-15N HSQC | 0.7 mM [U-2H,13C,15N]; Ile 1-[13CH3]; Leu,Val-[13CH3] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 3 | 2D 1H-15N HSQC | 1.1 mM [U-5%-13C,100%-15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 4 | 2D 1H-15N HSQC | 1.1 mM [U-5%-13C,100%-15N] protein, 12.5 mg/mL Pf1 phage | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 5 | 2D 1H-1H TOCSY | 0.7 mM [U-2H,13C,15N]; Ile 1-[13CH3]; Leu,Val-[13CH3] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 6 | 2D 1H-1H NOESY | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 7 | 2D 1H-13C HSQC aromatic | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 8 | 2D 1H-13C HSQC aliphatic | 1.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 9 | 2D 1H-13C HSQC aliphatic | 1.1 mM [U-5%-13C,100%-15N] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| 10 | 3D HNCO | 0.7 mM [U-2H,13C,15N]; Ile 1-[13CH3]; Leu,Val-[13CH3] protein | 90% H2O/10% D2O | 100 | 7.5 | ambient | 298 | |
| NMR Spectrometer Information |
|---|
| Spectrometer | Manufacturer | Model | Field Strength |
|---|
| 1 | Bruker | AVANCE | 800 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement |
|---|
| Method | Details | Software |
|---|
| torsion angle dynamics | | TopSpin |
| NMR Ensemble Information |
|---|
| Conformer Selection Criteria | target function |
|---|
| Conformers Calculated Total Number | 40000 |
|---|
| Conformers Submitted Total Number | 10 |
|---|
| Representative Model | 1 (structural features) |
|---|
| Computation: NMR Software |
|---|
| # | Classification | Version | Software Name | Author |
|---|
| 1 | collection | TopSpin | 2.1 | Bruker |
| 2 | processing | TopSpin | 2.1 | Bruker |
| 3 | processing | NMRPipe | | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 4 | chemical shift assignment | Sparky | | Goddard |
| 5 | data analysis | CYANA | | Guntert, Mumenthaler and Wuthrich |
| 6 | structure solution | CS-ROSETTA | | Shen, Vernon, Baker and Bax |
| 7 | structure validation | PSVS | | Bhattacharya and Montelione |
| 8 | refinement | CS-ROSETTA | | |