SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 2 | 2D 1H-13C HSQC | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 3 | 3D 1H-13C NOESY | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 4 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 5 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 6 | 3D HNCO | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 7 | 3D HNCA | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 8 | 3D HN(CO)CA | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 9 | 2D 1H-13C HSQC aromatic | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| 10 | 3D 1H-13C NOESY CN_filtered | 1 mM [U-13C; U-15N] protein, 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Agilent | PremiumCOMPACT | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| THE STRUCTURE OF THE 15N/13C-LABELED HIRAN DOMAIN WAS DETERMINED IN THE PRESENCE OF UNLABELED SSDNA (DTTTTTTTTTT). THE DNA STRUCTURE WAS NOT DETERMINED. DNA-BINDING SITE WAS MAPPED USING NMR CHEMICAL SHIFT CHANGES. THE VALUES OF DNA-BINDING INDUCED CHEMICAL SHIFT CHANGES ARE AVAILABLE AS PART OF BMRB DEPOSITION 25492. | Sparky | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | Sparky | Goddard | |
| 2 | data analysis | Sparky | Goddard | |
| 3 | peak picking | Sparky | Goddard | |
| 4 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 5 | refinement | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 6 | geometry optimization | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 7 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 8 | data analysis | Procheck | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton | |
| 9 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
