2RU9 | pdb_00002ru9

Structure of the YAM domain of E. coli Transporter YajR

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
2	3D HNCO	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
3	3D HNCACB	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
4	3D CBCA(CO)NH	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
5	2D 1H-13C HSQC	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
6	3D C(CO)NH	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
7	3D HBHA(CO)NH	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
8	3D 1H-13C NOESY aliphatic	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
9	3D 1H-15N NOESY	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303
10	3D 1H-13C NOESY aromatic	90 % H2O-1, 10 % D2O-2, 50 mM sodium phosphate-3, 1 mM EDTA-4, 1 mM DTT-5, 150 mM sodium chloride-6	90% H2O/10% D2O	0.2	6.3	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing		ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	ARIA	2.3	Linge, O'Donoghue and Nilges
2	structure solution	ARIA	2.3	Linge, O'Donoghue and Nilges
3	data analysis	Sparky		Goddard
4	chemical shift assignment	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7	refinement	ARIA