X-RAY DIFFRACTION
Crystallization
| Crystalization Experiments | ||||
|---|---|---|---|---|
| ID | Method | pH | Temperature | Details | 
| 1 | 4.6 | 298 | 5 microL protein in 50 mM HEPES pH 7.5, 1 mM DTT, 4 microL reservoir (0.1M Na acetate pH 4.6,1M ammonium phosphate monobasic), 1 microL 100mM glutathione pH 7.0, vapor diffusion, temperature 298K | |
| Crystal Properties | |
|---|---|
| Matthews coefficient | Solvent content | 
| 2.55 | 51.82 | 
Crystal Data
| Unit Cell | |
|---|---|
| Length ( Å ) | Angle ( ˚ ) | 
| a = 111.34 | α = 90 | 
| b = 111.34 | β = 90 | 
| c = 111.34 | γ = 90 | 
| Symmetry | |
|---|---|
| Space Group | P 43 3 2 | 
Diffraction
| Diffraction Experiment | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
| 1 | 1 | x-ray | 100 | CCD | MARMOSAIC 225 mm CCD | 2007-07-04 | M | SINGLE WAVELENGTH | ||||||
| Radiation Source | |||||
|---|---|---|---|---|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline | 
| 1 | SYNCHROTRON | APS BEAMLINE 21-ID-D | APS | 21-ID-D | |
Data Collection
| Overall | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
| 1 | 1.05 | 50 | 98.1 | 0.069 | 16.2 | 7.8 | 107437 | ||||||||||||
| Highest Resolution Shell | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
| 1 | 1.05 | 1.09 | 99.7 | 0.465 | 5.7 | ||||||||||||||
Refinement
| Statistics | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | ||||
| X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | FREE R | NONE | 1.05 | 26 | 107373 | 5366 | 93.3 | 0.1317 | 0.1392 | 0.1528 | 0.1574 | RANDOM | 16.7281 | |||||
| Temperature Factor Modeling | ||||||
|---|---|---|---|---|---|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
| Coordinate Error | ||
|---|---|---|
| Structure Solution Method | Refinement High Resolution | Refinement Low Resolution | 
| 24 | 1584 | 1876.55 | 
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation | 
| s_anti_bump_dis_restr | 0.213 | 
| s_non_zero_chiral_vol | 0.099 | 
| s_approx_iso_adps | 0.099 | 
| s_zero_chiral_vol | 0.08 | 
| s_similar_adp_cmpnt | 0.053 | 
| s_angle_d | 0.033 | 
| s_from_restr_planes | 0.0268 | 
| s_bond_d | 0.016 | 
| s_rigid_bond_adp_cmpnt | 0.006 | 
| s_similar_dist | |
| Non-Hydrogen Atoms Used in Refinement | |
|---|---|
| Non-Hydrogen Atoms | Number | 
| Protein Atoms | 1587 | 
| Nucleic Acid Atoms | |
| Solvent Atoms | 281 | 
| Heterogen Atoms | 33 | 
Software
| Software | |
|---|---|
| Software Name | Purpose | 
| SCALEPACK | data scaling | 
| PHASER | phasing | 
| SHELX | refinement | 
| PDB_EXTRACT | data extraction | 
| HKL-2000 | data reduction | 
| ARP/wARP | model building | 
| SHELXL-97 | refinement | 














