Experiment: 4HGY

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	291	0.1 M Na HEPES pH 7.5, 1.3 M Li2SO4.H2O, 10% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Properties
Matthews coefficient	Solvent content
3.34	63.19

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 168.18	α = 90
b = 245.14	β = 90
c = 117.83	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r	Pd coated toroidal mirror (Seso, France)	2009-06-22	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID14-4	0.97936, 0.97944, 0.97549	ESRF	ID14-4

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3	62.4	100	0.076	25.9	14.6	49290	49290		2	62.3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3	3.16	100		0.378	7.5	14.9	7117

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	3	62.36	49069	46589	2480	99.94	0.22633	0.22633	0.22518	0.2168	0.24791	0.2379	RANDOM	62.292

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.59			1.52		-0.93

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.475
r_dihedral_angle_4_deg	15
r_dihedral_angle_3_deg	13.807
r_dihedral_angle_1_deg	4.492
r_scangle_it	3.613
r_scbond_it	2.071
r_mcangle_it	1.464
r_mcbond_it	0.748
r_angle_refined_deg	0.747
r_chiral_restr	0.051

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.475
r_dihedral_angle_4_deg	15
r_dihedral_angle_3_deg	13.807
r_dihedral_angle_1_deg	4.492
r_scangle_it	3.613
r_scbond_it	2.071
r_mcangle_it	1.464
r_mcbond_it	0.748
r_angle_refined_deg	0.747
r_chiral_restr	0.051
r_bond_refined_d	0.004
r_gen_planes_refined	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10753
Nucleic Acid Atoms
Solvent Atoms	92
Heterogen Atoms	71

Software

Software
Software Name	Purpose
ADSC	data collection
BP3	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
BP3	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.