Experiment: 4L6Q

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	298	1.2 M sodium citrate and 2 mM DTT, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
4.15	70.37

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 136.465	α = 90
b = 147.518	β = 125.17
c = 91.214	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	PSI PILATUS 6M		2009-07-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.0000	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.79	89.09	95.7	0.065	6.5	2.5	37670	36050

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.79	2.98	96.2		1.134	0.7	2.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.79	49.5	37670	33966	710	96.19	0.22356	0.22356	0.22239	0.22	0.28142	0.27	RANDOM	87.052

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.03		-0.66	0.27		-0.99

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.631
r_dihedral_angle_4_deg	20.862
r_dihedral_angle_3_deg	16.793
r_dihedral_angle_1_deg	6.208
r_scangle_it	5.901
r_scbond_it	3.74
r_mcangle_it	2.602
r_mcbond_it	1.403
r_angle_refined_deg	1.141
r_angle_other_deg	0.824

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.631
r_dihedral_angle_4_deg	20.862
r_dihedral_angle_3_deg	16.793
r_dihedral_angle_1_deg	6.208
r_scangle_it	5.901
r_scbond_it	3.74
r_mcangle_it	2.602
r_mcbond_it	1.403
r_angle_refined_deg	1.141
r_angle_other_deg	0.824
r_mcbond_other	0.254
r_chiral_restr	0.065
r_bond_refined_d	0.008
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6292
Nucleic Acid Atoms
Solvent Atoms	6
Heterogen Atoms	40

Software

Software
Software Name	Purpose
HKL-2000	data collection
CCP4	model building
Coot	model building
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
CCP4	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.