4NRU | pdb_00004nru

Murine Norovirus RNA-dependent-RNA-polymerase in complex with Compound 6, a suramin derivative

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH	8.4	293.15	1.6M (NH4)2SO4, 12% Glycerol, 100mM TrisHCL pH8.4, microbatch, temperature 293.15K

Crystal Properties
Matthews coefficient	Solvent content
3.09	60.16

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 109.22	α = 90
b = 162.42	β = 97.04
c = 122.96	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	PSI PILATUS 6M		2013-04-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29	0.97949	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.3	64.96	99.9				188102

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.3	2.42	99.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.3	61.09	178553	178553	9440	99.83	0.194	0.194	0.19085	0.1941	0.25396	0.2542	RANDOM	45.367

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.11		0.68	0.82		1.17

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.188
r_dihedral_angle_4_deg	19.272
r_dihedral_angle_3_deg	16.515
r_dihedral_angle_1_deg	5.98
r_angle_other_deg	3.531
r_angle_refined_deg	1.333
r_chiral_restr	0.074
r_bond_refined_d	0.01
r_gen_planes_other	0.007
r_gen_planes_refined	0.006

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.188
r_dihedral_angle_4_deg	19.272
r_dihedral_angle_3_deg	16.515
r_dihedral_angle_1_deg	5.98
r_angle_other_deg	3.531
r_angle_refined_deg	1.333
r_chiral_restr	0.074
r_bond_refined_d	0.01
r_gen_planes_other	0.007
r_gen_planes_refined	0.006
r_bond_other_d

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	22787
Nucleic Acid Atoms
Solvent Atoms	1714
Heterogen Atoms	286

Software

Software
Software Name	Purpose
EDNA	data collection
MOLREP	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.