Experiment: 4Z1R

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1CAG

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		292	20% PEG 400, 5% acetic acid

Crystal Properties
Matthews coefficient	Solvent content
1.83	32.96

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 171.573	α = 90
b = 13.939	β = 94.59
c = 24.981	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX-225		2013-11-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.2	0.91841	BESSY	14.2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.27	30	98.6	0.052	0.06	17.15	3.8		16057		-3	11.523

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.27	1.35	93.7		0.148	0.179	8.01

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1CAG	1.27	28.5	15012	1044	98.59	0.1396	0.1374	0.14	0.1713	0.17	RANDOM	8.171

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.5		0.17	-0.43		-0.09

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	27.855
r_sphericity_bonded	7.143
r_dihedral_angle_1_deg	5.881
r_angle_refined_deg	2.031
r_rigid_bond_restr	1.326
r_mcangle_it	1.258
r_mcbond_it	1.105
r_angle_other_deg	1.096
r_mcbond_other	1.095
r_chiral_restr	0.085

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	27.855
r_sphericity_bonded	7.143
r_dihedral_angle_1_deg	5.881
r_angle_refined_deg	2.031
r_rigid_bond_restr	1.326
r_mcangle_it	1.258
r_mcbond_it	1.105
r_angle_other_deg	1.096
r_mcbond_other	1.095
r_chiral_restr	0.085
r_bond_refined_d	0.013
r_gen_planes_refined	0.011
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	491
Nucleic Acid Atoms
Solvent Atoms	188
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
REFMAC	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.