6EWU | pdb_00006ewu

Solution Structure of Rhabdopeptide NRPS Docking Domain Kj12C-NDD

SOLID-STATE NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	200 uM [U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
2	3D 1H-13C NOESY aliphatic	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
3	3D 1H-13C NOESY aromatic	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
4	3D HNCACB	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 800
5	3D HNCO	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 800
20	3D HN(CA)CO	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 800
19	3D HBHA(CO)NH	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
18	3D H(CCO)NH	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 800
17	3D (H)C(CCO)NH	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 800
16	3D HCCH-TOCSY	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
15	3D HCCH-TOCSY	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
14	2D 1H-13C HSQC aliphatic	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
13	2D 1H-13C HSQC aromatic	700 uM [U-13C; U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600
12	2D 1H-15N HSQC	200 uM [U-15N] Kj12CDD	90% H2O/10% D2O	100 mM	6.5	AMBIENT Pa	293	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	600
10	Bruker	AVANCE	600
9	Bruker	AVANCE	700
8	Bruker	AVANCE	800
7	Bruker	AVANCE	800
6	Bruker	AVANCE	950

NMR Refinement
Method	Details	Software
Energy refinement and molecular dynamics simulation algorithm for biomolecules		OPALp

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	CYANA	3.97	Guentert
2	chemical shift assignment	CARA		Keller and Wuthrich
3	collection	TopSpin		Bruker Biospin
4	data analysis	CcpNmr Analysis		CCPN
5	peak picking	UNIO'10 (ATNOS/CANDID		(3) Herrmann, T.; uentert, P.; Wuethrich, K. J. Mol. Biol. 2002, 319, 209-227. (4) Herrmann, T.; Guentert, P.; Wuethrich, K. J. Biomol. NMR 2002, 24, 171-189.
6	refinement	OPALp		Luginbuhl, Guntert, Billeter and Wuthrich