Experiment: 6SPH

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1UXM

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	100 mM Tris-HCl pH 7.4-8.0, 2.4-2.6 M ammonium sulphate, 150 mM NaCl

Crystal Properties
Matthews coefficient	Solvent content
4.3	71.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.313	α = 90
b = 195.237	β = 97.86
c = 75.348	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER R 4M		2018-08-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E	1.54179

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.25	47.25	97.3	0.084	0.996	10.3	3.5		70706

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.25	2.3	97.7		0.46	0.639	1.9	2.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1UXM	2.25	43	70706	3894	98.31	0.18781	0.1859	0.22	0.2223	0.24	RANDOM	18.461

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.48		-0.28	-0.1		0.63

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.831
r_dihedral_angle_4_deg	17.083
r_dihedral_angle_3_deg	14.612
r_dihedral_angle_1_deg	8.101
r_angle_refined_deg	1.476
r_mcangle_it	1.36
r_angle_other_deg	1.283
r_mcbond_it	0.768
r_mcbond_other	0.768
r_chiral_restr	0.064

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.831
r_dihedral_angle_4_deg	17.083
r_dihedral_angle_3_deg	14.612
r_dihedral_angle_1_deg	8.101
r_angle_refined_deg	1.476
r_mcangle_it	1.36
r_angle_other_deg	1.283
r_mcbond_it	0.768
r_mcbond_other	0.768
r_chiral_restr	0.064
r_gen_planes_other	0.013
r_gen_planes_refined	0.011
r_bond_refined_d	0.008
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6672
Nucleic Acid Atoms
Solvent Atoms	812
Heterogen Atoms	175

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
AUTOMAR	data reduction
Aimless	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.