6TKD | pdb_00006tkd

ChiLob 7/4 H2 HC-C228S F(ab')2

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6FAX

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	293	PEG 4000, ammonium sulphate

Crystal Properties
Matthews coefficient	Solvent content
3.05	59.64

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 148.021	α = 90
b = 148.021	β = 90
c = 46.139	γ = 120

Symmetry
Space Group	P 3 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2016-07-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.976	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	128.19	99.2	0.109	0.047	0.996	9.4	6.9		45431

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.94			0.32	0.768	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	6FAX	1.9	128.19	45413	2214	98.967	0.174	0.1726	0.18	0.2064	0.21	27.549

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.017	0.009		0.017		-0.056

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.433
r_dihedral_angle_4_deg	19.972
r_dihedral_angle_3_deg	13.261
r_dihedral_angle_1_deg	7.891
r_lrange_it	7.046
r_lrange_other	6.842
r_scangle_it	5.04
r_scangle_other	5.039
r_mcangle_it	3.71
r_mcangle_other	3.709
r_scbond_it	3.377
r_scbond_other	3.376
r_mcbond_it	2.632
r_mcbond_other	2.631
r_angle_other_deg	2.577
r_angle_refined_deg	1.699
r_symmetry_xyhbond_nbd_refined	0.263
r_symmetry_nbd_other	0.211
r_xyhbond_nbd_refined	0.194
r_nbd_refined	0.189
r_nbd_other	0.184
r_symmetry_nbd_refined	0.179
r_nbtor_refined	0.164
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.08
r_bond_other_d	0.037
r_gen_planes_other	0.012
r_bond_refined_d	0.011
r_gen_planes_refined	0.01

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3315
Nucleic Acid Atoms
Solvent Atoms	401
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing