7VVL | pdb_00007vvl

PTH-bound human PTH1R in complex with Gs (class2)


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.712
r_dihedral_angle_3_deg20.758
r_long_range_B_refined20.709
r_long_range_B_other20.707
r_dihedral_angle_4_deg18.047
r_scangle_other14.288
r_mcangle_other12.823
r_mcangle_it12.821
r_scbond_it9.201
r_scbond_other9.201
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.712
r_dihedral_angle_3_deg20.758
r_long_range_B_refined20.709
r_long_range_B_other20.707
r_dihedral_angle_4_deg18.047
r_scangle_other14.288
r_mcangle_other12.823
r_mcangle_it12.821
r_scbond_it9.201
r_scbond_other9.201
r_mcbond_it8.793
r_mcbond_other8.788
r_dihedral_angle_1_deg5.637
r_angle_refined_deg1.474
r_angle_other_deg1.447
r_chiral_restr0.081
r_bond_other_d0.027
r_bond_refined_d0.01
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
endogenous ligand-bound the human PTH receptor in complex with Gs
Sample Components
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
nanobody Nb35
Parathyroid hormone
Parathyroid hormone/parathyroid hormone-related peptide receptor
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles490054
Reported Resolution (Å)2.8
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)64.319
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)600
Maximum Defocus (nm)1500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE