8AIT | pdb_00008ait

Crystal structure of cutinase PbauzCut from Pseudomonas bauzanensis

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4CG1

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1 M Sodium acetate 4.5, 50 % w/v PEG 400, 0.2 M Lithium sulfate

Crystal Properties
Matthews coefficient	Solvent content
1.85	33.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 43.1	α = 90
b = 52.9	β = 106.305
c = 56.748	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2018-03-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91587	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.24	52.9	99.6	0.097	0.063	0.991	6.1	3.2		69263

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.24	1.26	96.6		0.483	0.314	0.563	2	3.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4CG1	1.24	41.367	68414	3323	98.534	0.215	0.2142	0.22	0.2379	0.25	8.832

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.221		0.147	-0.442		0.493

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	24.096
r_dihedral_angle_6_deg	17.678
r_dihedral_angle_3_deg	12.618
r_dihedral_angle_1_deg	7.106
r_lrange_it	4.494
r_lrange_other	4.171
r_angle_refined_deg	1.707
r_scangle_it	1.245
r_scangle_other	1.21
r_scbond_it	0.867
r_scbond_other	0.786
r_mcangle_other	0.709
r_mcangle_it	0.708
r_angle_other_deg	0.595
r_mcbond_it	0.438
r_mcbond_other	0.424
r_xyhbond_nbd_refined	0.25
r_nbd_refined	0.23
r_symmetry_xyhbond_nbd_refined	0.219
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.184
r_nbd_other	0.181
r_symmetry_nbd_refined	0.111
r_chiral_restr	0.09
r_symmetry_nbtor_other	0.083
r_gen_planes_refined	0.011
r_bond_refined_d	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1995
Nucleic Acid Atoms
Solvent Atoms	265
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
MOLREP	phasing