8RH1

Trimeric HSV-2F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined33.292
r_long_range_B_other33.292
r_scangle_other21.231
r_mcangle_it17.872
r_mcangle_other17.871
r_dihedral_angle_3_deg15.452
r_scbond_it12.604
r_scbond_other12.603
r_mcbond_it10.961
r_mcbond_other10.961
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined33.292
r_long_range_B_other33.292
r_scangle_other21.231
r_mcangle_it17.872
r_mcangle_other17.871
r_dihedral_angle_3_deg15.452
r_scbond_it12.604
r_scbond_other12.603
r_mcbond_it10.961
r_mcbond_other10.961
r_dihedral_angle_2_deg7.043
r_dihedral_angle_1_deg5.121
r_angle_refined_deg1.073
r_angle_other_deg0.373
r_chiral_restr0.047
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_bond_other_d
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Trimeric HSV-2G gB ectodomain in post-fusion conformation with three bound HDIT101 Fab molecules
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentLEICA EM GP
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles234096
Reported Resolution (Å)3.45
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1 (2gum)
Refinement Space
Refinement ProtocolRIGID BODY FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)1.325
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS GLACIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)200
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION4.0
IMAGE ACQUISITIONSerialEM3.8
CTF CORRECTIONCTFFIND4.1.14
MODEL FITTINGCCP4 package1.6
INITIAL EULER ASSIGNMENTRELION4.0
FINAL EULER ASSIGNMENTRELION4.0
CLASSIFICATIONRELION4.0
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTCCP4 package1.6
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION6289845