8WRG | pdb_00008wrg

Solution structure of the TAD domain (450-504) of human transcriptional coactivator YAP1

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
2	3D CBCA(CO)NH	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
3	3D CBCANH	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
4	3D HNCO	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
5	3D H(CCO)NH	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
6	3D C(CO)NH	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
7	3D HBHA(CO)NH	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600
8	3D 1H-15N NOESY	0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O	95% H2O/5% D2O	120 mM	7.0	1 atm	298	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
4	peak picking	NMRFAM-SPARKY	POKY build 20230213	Woonghee Lee, Mehdi Rahimi, Yeongjoon Lee and Abigail Chiu
1	chemical shift assignment	NMRFAM-SPARKY	POKY build 20230213	Woonghee Lee, Mehdi Rahimi, Yeongjoon Lee and Abigail Chiu
2	structure calculation	CNS	ARIA2.3	Wolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Therese E. Malliavin and Michael Nilges

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.