9I76 | pdb_00009i76

Pseudomonas aeruginosa FabF C164A in complex with 4-(1H-pyrazole-3-carboxamido)butanoic acid

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		In-house determined apo structure

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	0.24 ammonium formate and 35% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.11	41.71

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 100.8	α = 90
b = 103.8	β = 90
c = 141.72	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2022-11-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.03321	PETRA III, DESY	P11

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.47	48.74	99.9	0.999	13.2	7.4		125625

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.47	1.5	100		0.482		7.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.47	48.73	125580	6418	99.811	0.163	0.1616	0.1627	0.1898	0.1908	27.8

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.99			0.283		0.708

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.709
r_dihedral_angle_3_deg	13.151
r_dihedral_angle_2_deg	9.874
r_lrange_other	7.034
r_lrange_it	7.031
r_dihedral_angle_1_deg	6.658
r_scangle_other	6.257
r_scangle_it	6.255
r_scbond_it	4.499
r_scbond_other	4.447
r_mcangle_it	3.253
r_mcangle_other	3.253
r_mcbond_other	2.359
r_mcbond_it	2.356
r_angle_refined_deg	1.983
r_angle_other_deg	0.791
r_nbd_refined	0.208
r_nbtor_refined	0.17
r_symmetry_nbd_other	0.166
r_nbd_other	0.14
r_xyhbond_nbd_refined	0.129
r_chiral_restr	0.109
r_symmetry_nbd_refined	0.089
r_symmetry_xyhbond_nbd_refined	0.085
r_symmetry_nbtor_other	0.074
r_ncsr_local_group_1	0.067
r_bond_refined_d	0.012
r_gen_planes_refined	0.011
r_bond_other_d	0.003
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6066
Nucleic Acid Atoms
Solvent Atoms	322
Heterogen Atoms	132

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
pointless	data scaling
PHASER	phasing