9WSH | pdb_00009wsh

ToFrO 15E_to_15Z_10ns

X-RAY DIFFRACTION

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Serial Crystallography (SX)

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9WS1

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH		293.15	5% (w/v) 1-Ethyl-3-methylimidazolium trifluoromethanesulfonate, 15% (w/v) PEG 20,000

Crystal Properties
Matthews coefficient	Solvent content
2.49	50.64

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.04	α = 90
b = 53.87	β = 101.15
c = 79.95	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	294	PIXEL	CS-PAD CXI-2		2025-03-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SLAC LCLS BEAMLINE CXI	1.3	SLAC LCLS	CXI

Serial Crystallography

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	19.7	100	0.81	4.44	96.68		12751

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.64			0.67

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	9WS1	2.601	18.505	12711	639	99.476	0.289	0.2882	0.288	0.3114	0.3119	19.719

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.107		-0.101	-0.117		0.046

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	22.98
r_dihedral_angle_3_deg	16.224
r_dihedral_angle_6_deg	15.942
r_dihedral_angle_other_3_deg	5.12
r_dihedral_angle_1_deg	4.598
r_lrange_it	3.634
r_lrange_other	3.605
r_angle_other_deg	3.331
r_scangle_it	2.75
r_scangle_other	2.75
r_mcangle_it	2.688
r_mcangle_other	2.687
r_scbond_it	1.989
r_scbond_other	1.988
r_mcbond_it	1.782
r_mcbond_other	1.782
r_angle_refined_deg	1.744
r_symmetry_xyhbond_nbd_refined	1.27
r_symmetry_nbd_refined	0.518
r_nbd_other	0.426
r_symmetry_nbd_other	0.239
r_xyhbond_nbd_refined	0.207
r_nbd_refined	0.205
r_nbtor_refined	0.177
r_symmetry_xyhbond_nbd_other	0.122
r_symmetry_nbtor_other	0.11
r_chiral_restr	0.057
r_bond_refined_d	0.018
r_gen_planes_other	0.007
r_gen_planes_refined	0.005
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2435
Nucleic Acid Atoms
Solvent Atoms	163
Heterogen Atoms	86

Software

Software
Software Name	Purpose
REFMAC	refinement
Coot	model building
CrystFEL	data scaling
PHASER	phasing