GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 6GVM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 6GVM_GDP_B_501 | 43% | 62% | 0.216 | 0.94 | 0.79 | 0.66 | - | - | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 5JCB_GDP_B_501 | 100% | 35% | 0.044 | 0.987 | 1.25 | 1.33 | 3 | 3 | 0 | 0 | 100% | 1 |
| 6QTN_GDP_B_501 | 99% | 47% | 0.048 | 0.984 | 0.94 | 1.11 | 2 | 3 | 0 | 0 | 100% | 1 |
| 8YRK_GDP_B_501 | 98% | 50% | 0.056 | 0.98 | 0.95 | 0.98 | 1 | 2 | 0 | 0 | 100% | 1 |
| 9IM5_GDP_B_506 | 98% | 47% | 0.055 | 0.978 | 1.01 | 1.05 | 1 | 2 | 0 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C43_GDP_B_201 | 100% | 54% | 0.016 | 0.997 | 1.08 | 0.72 | 2 | - | 0 | 0 | 100% | 1 |
| 9C41_GDP_B_202 | 100% | 53% | 0.02 | 0.997 | 1.07 | 0.76 | 3 | - | 0 | 0 | 100% | 1 |
| 9C40_GDP_B_202 | 100% | 39% | 0.028 | 0.995 | 1.09 | 1.27 | 1 | 3 | 0 | 0 | 100% | 1 |
