10LM | pdb_000010lm

Native flagellar filament from Leptospira biflexa


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: integrative
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wwPDB Validation 3D Report Full Report

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Literature

Core-sheath coupling controls flagellar curvature and motility in Leptospira.

San Martin, F.Brady, M.R.Fule, L.Nouchikian, L.Rodriguez, A.Duchateau, M.Mondino, S.Larrieux, N.Wunder Jr., E.A.Ko, A.I.Rey, M.Chamot-Rooke, J.Duran, R.Trajtenberg, F.Picardeau, M.Sindelar, C.V.Buschiazzo, A.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-75995-6
  • Primary Citation Related Structures: 
    10LK, 10LL, 10LM

  • PubMed Abstract: 

    Spirochaete pathogens are among the most invasive bacteria known, causing syphilis, Lyme disease, and leptospirosis. Their tissue penetration depends on periplasmic flagellar filaments that, unlike other bacterial flagella, are encased in a spirochaete-specific multi-protein sheath and deform the cell body into motile waves. How these filaments achieve the mechanical properties needed for invasive motility has remained unclear. Here we determine complete atomic structures of the Leptospira endoflagellar filament, revealing an elaborate sheath of 9 to 12 distinct asymmetrically arranged proteins. We show that the flagellin variant forming the filament core determines sheath composition, producing curvatures ranging from ~3.5 µm -1 to ~5.6 µm -1 . The lower-curvature architecture, employed by pathogenic Leptospira interrogans, proves essential for motility in viscous environments and during infection. Thus, Leptospira achieves environment-specific motility through modular core-sheath coupling, linking atomic-scale structural plasticity to large-scale changes in swimming behaviour. Conservation of key sheath components suggests this mechanism may extend across spirochaetes.


  • Organizational Affiliation
    • Institut Pasteur de Montevideo, Laboratory of Molecular & Structural Microbiology, Montevideo, Uruguay.

Macromolecule Content 

  • Total Structure Weight: 4,631.4 kDa 
  • Atom Count: 248,112 
  • Modeled Residue Count: 31,164 
  • Deposited Residue Count: 40,543 
  • Unique protein chains: 10

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellin282Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SQZ5 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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UniProt GroupB0SQZ5
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar Coiling Protein FcpA300Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0STJ8 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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UniProt GroupB0STJ8
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar Coiling Protein FcpB277Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SR03 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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UniProt GroupB0SR03
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
LEPBI_I1029 proteinFD [auth U3],
GD [auth U4],
HD [auth U5],
ID [auth U6]
321Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SMK8 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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UniProt GroupB0SMK8
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar filament outer layer protein (Sheath protein) putative signal peptide241Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SKT5 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
FlaA2 associated protein B0STF2TD [auth Y1],
UD [auth Y2],
VD [auth Y3],
WD [auth Y4]
284Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0STF2 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
FlaA2-associated protein FlaAPAE [auth Za],
XD [auth Z0],
YD [auth Z1],
ZD [auth Z2]
367Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SJC6 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
LEPBI_I3081 proteinBE [auth a1],
CE [auth a2],
DE [auth a3],
EE [auth a4],
FE [auth a5]
239Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SPP1 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
LEPBI_I0662 proteinGE [auth b2],
HE [auth b3],
IE [auth b4]
269Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0SKN8 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
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UniProt GroupB0SKN8
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Reference Sequence
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
LEPBI_II0033 proteinJE [auth c1],
KE [auth c2],
LE [auth c3]
175Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)Mutation(s): 0 
UniProt
Find proteins for B0STN7 (Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
Explore B0STN7 
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA
(Subject of Investigation/LOI)

Query on CA



Download:Ideal Coordinates CCD File
OE [auth V0]
PE [auth V1]
QE [auth V2]
RE [auth V3]
SE [auth V4]
OE [auth V0],
PE [auth V1],
QE [auth V2],
RE [auth V3],
SE [auth V4],
TE [auth X0],
UE [auth X1],
VE [auth X2],
WE [auth X3],
XE [auth X4]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX2.0-5936
MODEL REFINEMENTServalcat0.4.128
RECONSTRUCTIONcryoSPARC4.2.1

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agencia Nacional de Investigacion e Innovacion (ANII)Uruguay--

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-02
    Type: Initial release