1T0B | pdb_00001t0b

Structure of ThuA-like protein from Bacillus stearothermophilus

• PDB DOI: https://doi.org/10.2210/pdb1T0B/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Geobacillus stearothermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-04-08 Released: 2004-08-03 
• Deposition Author(s): Borek, D., Chen, Y., Collart, F., Joachimiak, A., Otwinowski, Z., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.175 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.145 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.145 (Depositor) 

Literature

Analysis of chemical interactions in ThuA-like protein from Bacillus Stearothermophilus

Borek, D., Chen, Y., Collart, F., Joachimiak, A., Otwinowski, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 230.63 kDa 
• Atom Count: 17,343 
• Modeled Residue Count: 1,924 
• Deposited Residue Count: 2,016 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ThuA-like protein	A, B, C, D, E, F, G, H	252	Geobacillus stearothermophilus	Mutation(s): 0
UniProt
Find proteins for Q5KY38 (Geobacillus kaustophilus (strain HTA426)) Explore Q5KY38  Go to UniProtKB:  Q5KY38

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.175 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.145 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.145 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.542	α = 90.84
b = 74.603	β = 97.78
c = 123.518	γ = 118.69

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SnB	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-08-03 
Deposition Author(s): Borek, D., Chen, Y., Collart, F., Joachimiak, A., Otwinowski, Z., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2004-08-03
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Advisory, Refinement description
• Version 1.4: 2024-02-14
  Changes: Advisory, Data collection, Database references, Derived calculations