2BO1 | pdb_00002bo1

Crystal structure of a hybrid ribosomal protein L30e with surface residues from T. celer, and core residues from yeast

PDB DOI: https://doi.org/10.2210/pdb2BO1/pdb

Classification: RIBOSOMAL PROTEIN
Organism(s): Thermococcus celer
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2005-04-07 Released: 2006-08-23
Deposition Author(s): Lee, C.F., Cha, S.S., Lee, H.S., Wong, K.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.240 (Depositor), 0.240 (DCC)
R-Value Work:
0.173 (Depositor), 0.190 (DCC)
R-Value Observed:
0.176 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Contribution of Hydrophobic Core and Electrostatic Surface to the Thermodyanmic Stability of Ribosomal Protein L30E

Lee, C.F., Cha, S.S., Lee, H.S., Wong, K.B.

To be published.

Macromolecule Content

Total Structure Weight: 11.2 kDa
Atom Count: 914
Modeled Residue Count: 101
Deposited Residue Count: 101
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S RIBOSOMAL PROTEIN L30E	A	101	Thermococcus celer	Mutation(s): 28
UniProt
Find proteins for P29160 (Thermococcus celer) Explore P29160 Go to UniProtKB: P29160
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P29160
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.240 (Depositor), 0.240 (DCC)
R-Value Work: 0.173 (Depositor), 0.190 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.187	α = 90
b = 52.531	β = 90
c = 52.692	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
DENZO	data reduction
HKL-2000	data scaling
SCALEPACK	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-08-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-08-23
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.