The omega and delta subunits of RNA polymerase control sporulation in Bacillus subtilis
Pospisilova, D., Gao, Y.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase subunit epsilon | A [auth E] | 69 | Bacillus subtilis | Mutation(s): 0  EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for A0A9W5LJC9 (Bacillus inaquosorum KCTC 13429) Explore A0A9W5LJC9  Go to UniProtKB:  A0A9W5LJC9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A9W5LJC9 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase subunit alpha | B [auth U], C [auth V] | 314 | Bacillus subtilis | Mutation(s): 0  EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P20429 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase subunit beta | D [auth X] | 1,193 | Bacillus subtilis | Mutation(s): 0  EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P37870 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase subunit beta' | E [auth Y] | 1,209 | Bacillus subtilis | Mutation(s): 0  Gene Names: rpoC, lpm, std, BSU01080 EC: 2.7.7.6 | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P37871 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA polymerase sigma factor SigA | 371 | Bacillus subtilis | Mutation(s): 0  Gene Names: sigA, rpoD, BSU25200 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06224 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-directed RNA polymerase subunit delta | J [auth D] | 173 | Bacillus subtilis | Mutation(s): 0  | ![]() |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12464 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 5 | ||||
| Molecule | Chains | Length | Organism | Image |
|---|---|---|---|---|
| RNA | F [auth R] | 5 | Bacillus subtilis | ![]() |
Sequence AnnotationsExpand | ||||
Reference Sequence | ||||
Entity ID: 7 | ||||
| Molecule | Chains | Length | Organism | Image |
|---|---|---|---|---|
| SigA controlled promoter Pveg | H [auth K] | 60 | Bacillus subtilis | ![]() |
Sequence AnnotationsExpand | ||||
Reference Sequence | ||||
Entity ID: 8 | ||||
| Molecule | Chains | Length | Organism | Image |
|---|---|---|---|---|
| SigA controlled promoter Pveg | I [auth L] | 63 | Bacillus subtilis | ![]() |
Sequence AnnotationsExpand | ||||
Reference Sequence | ||||
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Download:Ideal Coordinates CCD File | L [auth Y], M [auth Y] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
| MG Download:Ideal Coordinates CCD File | K [auth Y] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.21.2_5419 |
| RECONSTRUCTION | cryoSPARC | 4.4.0 |
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation (DFG) | Germany | 490765950 |