37DK | pdb_000037dk

Discovery of CNS Penetrant Transthyretin (TTR) Stabilizers with Heterocyclic Linkers

PDB DOI: https://doi.org/10.2210/pdb37DK/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia phage Ecwhy_1
Mutation(s): No

Deposited: 2026-07-15 Released: 2026-10-07
Deposition Author(s): Liu, S., Wu, X., Liu, S., Wu, H.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.16 Å
R-Value Free:
0.212 (Depositor), 0.207 (DCC)
R-Value Work:
0.182 (Depositor), 0.177 (DCC)
R-Value Observed:
0.184 (Depositor)

Starting Model: experimental
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Literature

Discovery of Neutral and Cerebrospinal Fluid Penetrant Transthyretin (TTR) Stabilizers with Heterocyclic Linkers

Wang, T., Thuma, B.A., Wisniewska, H.M., Lee Johnson, Z., Tu, M., Byrnes, L.J., Cabral, S., Canterbury, D.P., Clemens, J., Coffey, S.B., Dow, R., Dowling, M.S., Fensome, A., Fleming, J., Futatsugi, K., Kalgutkar, A.S., Korczynska, M., Kung, D.W., Lapham, K., Lavergne, S.Y., Limberakis, C., Liu, S., Londregan, A.T., Loria, P.M., Mascitti, V., Moody, A.T., Novak, J.J., Piotrowski, D.W., Sharma, R., Shavnya, A., Stock, I.A., Tess, D.A., Tsai, A.S., Wei, L., Wenzel, Z., Wu, H.

(2026) J Med Chem

DOI: https://doi.org/10.1021/acs.jmedchem.6c02318

Macromolecule Content

Total Structure Weight: 28.07 kDa
Atom Count: 2,304
Modeled Residue Count: 231
Deposited Residue Count: 254
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transthyretin	A, B	127	Homo sapiens	Mutation(s): 0 Gene Names: TTR, PALB
UniProt & NIH Common Fund Data Resources
Find proteins for P02766 (Homo sapiens) Explore P02766 Go to UniProtKB: P02766
PHAROS: P02766 GTEx: ENSG00000118271
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02766
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1DMZ( Subject of Investigation/LOI) Query on A1DMZ Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	1-(3,5-dimethyl-1H-pyrazol-4-yl)-4-phenylpiperidine C₁₆ H₂₁ N₃ RGCFUMMICSDFTK-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.16 Å
R-Value Free: 0.212 (Depositor), 0.207 (DCC)
R-Value Work: 0.182 (Depositor), 0.177 (DCC)
R-Value Observed: 0.184 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.26	α = 90
b = 42.71	β = 90
c = 64.13	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
STARANISO	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2026-10-07
Type: Initial release