3NAH | pdb_00003nah

Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase

• PDB DOI: https://doi.org/10.2210/pdb3NAH/pdb

• Classification: TRANSFERASE
• Organism(s): Murine norovirus 1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-06-02 Released: 2011-06-08 
• Deposition Author(s): Kim, K.H., Lee, J.H., Alam, I., Park, Y., Kang, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free: 
  0.303 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Literature

Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase

Kim, K.H., Lee, J.H., Alam, I., Park, Y., Kang, S.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 175.85 kDa 
• Atom Count: 11,710 
• Modeled Residue Count: 1,456 
• Deposited Residue Count: 1,551 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA dependent RNA polymerase	A, B, C	517	Murine norovirus 1	Mutation(s): 0
UniProt
Find proteins for Q80J95 (Norovirus (isolate Mouse/NoV/United States/MNV1/2002/GV)) Explore Q80J95  Go to UniProtKB:  Q80J95

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	D [auth A], E [auth B], F [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free:  0.303 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.833	α = 90
b = 196.543	β = 114.21
c = 109.156	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-08 
Deposition Author(s): Kim, K.H., Lee, J.H., Alam, I., Park, Y., Kang, S.

Revision History  

• Version 1.0: 2011-06-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2024-03-20
  Changes: Data collection, Database references, Derived calculations