4QIU | pdb_00004qiu

Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa in Mutant complex form

PDB DOI: https://doi.org/10.2210/pdb4QIU/pdb

Classification: OXIDOREDUCTASE
Organism(s): Pseudomonas aeruginosa PAO581
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-06-02 Released: 2015-07-08
Deposition Author(s): Chi, Y.M., Lee, J.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.198 (Depositor), 0.200 (DCC)
R-Value Work:
0.175 (Depositor), 0.180 (DCC)
R-Value Observed:
0.176 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa

Chi, Y.M., Lee, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 76.06 kDa
Atom Count: 6,023
Modeled Residue Count: 700
Deposited Residue Count: 712
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nitronate monooxygenase family protein	A, B	356	Pseudomonas aeruginosa PAO581	Mutation(s): 1 Gene Names: M801_4200 EC: 1.7.3.1
UniProt
Find proteins for A0A0M3KKW2 (Pseudomonas aeruginosa PAO581) Explore A0A0M3KKW2 Go to UniProtKB: A0A0M3KKW2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0M3KKW2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN Query on FMN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B] mmCIF format, chain C [auth A] mmCIF format, chain E [auth B]	C [auth A], E [auth B]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
N1P Query on N1P Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	1-nitropropane C₃ H₇ N O₂ JSZOAYXJRCEYSX-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.198 (Depositor), 0.200 (DCC)
R-Value Work: 0.175 (Depositor), 0.180 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.066	α = 90
b = 56.794	β = 97.09
c = 87.237	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHENIX	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2015-07-08

Deposition Author(s):

Chi, Y.M.

Lee, J.H.

Revision History (Full details and data files)

Version 1.0: 2015-07-08
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description

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Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa in Mutant complex form

Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations