5ARM | pdb_00005arm

APO-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS

• PDB DOI: https://doi.org/10.2210/pdb5ARM/pdb

• Classification: COPPER-BINDING PROTEIN
• Organism(s): Methylosinus trichosporium OB3b
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-09-25 Released: 2016-10-12 
• Deposition Author(s): Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.19 Å
• R-Value Free: 
  0.171 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.137 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.138 (Depositor) 

Starting Model: experimental

Literature

Novel Cytosolic Copper Storage Proteins

Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 14.55 kDa 
• Atom Count: 1,047 
• Modeled Residue Count: 127 
• Deposited Residue Count: 133 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CSP3	A	133	Methylosinus trichosporium OB3b	Mutation(s): 0
UniProt
Find proteins for A0A1I9GEP2 (Methylosinus trichosporium OB3b) Explore A0A1I9GEP2  Go to UniProtKB:  A0A1I9GEP2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.19 Å
• R-Value Free:  0.171 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.137 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.138 (Depositor) 

Space Group: C 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.17	α = 90
b = 105.5	β = 90
c = 45.07	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-10-12 
Deposition Author(s): Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.

Revision History  

• Version 1.0: 2016-10-12
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Other, Refinement description