Download MendeleyCrystal structure of Trypanosoma cruzi protein in complex with ligand
Yang, Y.Y., Ko, T.P., Zheng, Y.Y., Liu, W.D., Chen, C.C., Guo, R.T.(2016) ACS Chem Biol
5CUU | pdb_00005cuu
Crystal structure of Trypanosoma cruzi Vacuolar Soluble Pyrophosphatases in complex with bisphosphonate inhibitor BPH-1260
- PDB DOI: https://doi.org/10.2210/pdb5CUU/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Trypanosoma cruzi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-07-25 Released: 2016-03-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.96 Å
- R-Value Free: 0.274 (Depositor), 0.260 (DCC)
- R-Value Work: 0.194 (Depositor), 0.190 (DCC)
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acidocalcisomal pyrophosphatase | 414 | Trypanosoma cruzi | Mutation(s): 0 EC: 3.6.1.1 |  | |
UniProt | |||||
Find proteins for Q4JH30 (Trypanosoma cruzi) Explore Q4JH30 Go to UniProtKB: Q4JH30 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4JH30 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 4GA Query on 4GA | E [auth A], H [auth B] | 1-butyl-3-(2-hydroxy-2,2-diphosphonoethyl)-1H-imidazol-3-ium C9 H19 N2 O7 P2 JCMWHMYRNYPQAZ-UHFFFAOYSA-O |  | ||
| MLT Query on MLT | C [auth A], D [auth A], G [auth B] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | ||
| MG Query on MG | F [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.96 Å
- R-Value Free: 0.274 (Depositor), 0.260 (DCC)
- R-Value Work: 0.194 (Depositor), 0.190 (DCC)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.775 | α = 90 |
| b = 102.63 | β = 90 |
| c = 158.834 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-03-02 Deposition Author(s): Liu, W.D., Yang, Y.Y., Ko, T.P., Zheng, Y.Y., Chen, C.C., Guo, R.T.
Revision History (Full details and data files)
- Version 1.0: 2016-03-02
Type: Initial release - Version 1.1: 2016-03-09
Changes: Data collection - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
