Download MendeleyStructure of a single tryptophan mutant of Acetobacter aceti PurE
Sullivan, K.L., Tranchimand, S., Kappock, T.J.To be published.
5CVT | pdb_00005cvt
Structure of a single tryptophan mutant of Acetobacter aceti PurE containing 5-fluorotryptophan, pH 5.4
- PDB DOI: https://doi.org/10.2210/pdb5CVT/pdb
- Classification: ISOMERASE
- Organism(s): Acetobacter aceti 1023
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-07-27 Released: 2016-08-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.155 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.143 (Depositor)
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N5-carboxyaminoimidazole ribonucleotide mutase | 183 | Acetobacter aceti 1023 | Mutation(s): 2 Gene Names: purE, AZ09_02690 EC: 5.4.99.18 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGF Query on PGF | H [auth B] | 2,5,8,11-TETRAOXATRIDECANE C9 H20 O4 JRRDISHSXWGFRF-UHFFFAOYSA-N |  | ||
| CIT Query on CIT | D [auth A], F [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | C [auth A], E [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| K Query on K | G [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| FTR Query on FTR | A, B | L-PEPTIDE LINKING | C11 H11 F N2 O2 |  | TRP |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.155 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.143 (Depositor)
Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.695 | α = 90 |
| b = 98.695 | β = 90 |
| c = 165.057 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-08-10 Deposition Author(s): Sullivan, K.L., Kappock, T.J.
Revision History (Full details and data files)
- Version 1.0: 2016-08-10
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
