5J3C | pdb_00005j3c

Thermus thermophilus 70S termination complex containing E. coli RF1

• PDB DOI: https://doi.org/10.2210/pdb5J3C/pdb
• NAKB: 5J3C

• Classification: RIBOSOME
• Organism(s): Thermus thermophilus HB8, Escherichia coli JJ1887, synthetic construct, Escherichia coli O139:H28 str. E24377A
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-03-30 Released: 2016-10-12 
• Deposition Author(s): Hoffer, E.D., Dunham, C.M.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.04 Å
• R-Value Free: 
  0.279 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.246 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.248 (Depositor) 

Starting Model: experimental

Literature

Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.

Pierson, W.E., Hoffer, E.D., Keedy, H.E., Simms, C.L., Dunham, C.M., Zaher, H.S.

(2016) Cell Rep 17: 11-18

• PubMed: 27681416 
• DOI: https://doi.org/10.1016/j.celrep.2016.08.085
• Primary Citation of Related Structures:  
  5CZP, 5DFE, 5J30, 5J3C


• PubMed Abstract: 
  

  Termination of protein synthesis on the ribosome is catalyzed by release factors (RFs), which share a conserved glycine-glycine-glutamine (GGQ) motif. The glutamine residue is methylated in vivo, but a mechanistic understanding of its contribution to hydrolysis is lacking. Here, we show that the modification, apart from increasing the overall rate of termination on all dipeptides, substantially increases the rate of peptide release on a subset of amino acids. In the presence of unmethylated RFs, we measure rates of hydrolysis that are exceptionally slow on proline and glycine residues and approximately two orders of magnitude faster in the presence of the methylated factors. Structures of 70S ribosomes bound to methylated RF1 and RF2 reveal that the glutamine side-chain methylation packs against 23S rRNA nucleotide 2451, stabilizing the GGQ motif and placing the side-chain amide of the glutamine toward tRNA. These data provide a framework for understanding how release factor modifications impact termination.

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Organizational Affiliation: 
• Department of Biology, Washington University in St. Louis, Campus Box 1137, 1 Brookings Drive, St. Louis, MO 63130, USA.
Biochemistry, Cell and Developmental Biology Graduate Program, Emory University School of Medicine, 1510 Clifton Road NE, Room G223, Atlanta, GA 30322, USA; Department of Biochemistry, Emory University School of Medicine, 1510 Clifton Road NE, Room G223, Atlanta, GA 30322, USA.
Department of Biochemistry, Emory University School of Medicine, 1510 Clifton Road NE, Room G223, Atlanta, GA 30322, USA. Electronic address: [e-mail].
Department of Biology, Washington University in St. Louis, Campus Box 1137, 1 Brookings Drive, St. Louis, MO 63130, USA. Electronic address: [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 50-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 50-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 50-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1x1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 50-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 4,545.44 kDa 
• Atom Count: 294,929 
• Modeled Residue Count: 21,308 
• Deposited Residue Count: 22,168 
• Unique protein chains: 50
• Unique nucleic acid chains: 5

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L2	C [auth RD], FB [auth YD]	276	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60405 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60405  Go to UniProtKB:  P60405

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L3	D [auth RE], GB [auth YE]	206	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN8  Go to UniProtKB:  Q5SHN8

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L4	E [auth RF], HB [auth YF]	210	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN9  Go to UniProtKB:  Q5SHN9

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L5	F [auth RG], IB [auth YG]	182	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ0  Go to UniProtKB:  Q5SHQ0

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L6	G [auth RH], JB [auth YH]	180	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P0DOY8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P0DOY8  Go to UniProtKB:  P0DOY8

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L9	H [auth RI], KB [auth YI]	148	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SLQ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLQ1  Go to UniProtKB:  Q5SLQ1

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13	I [auth RN], LB [auth YN]	140	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60488 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60488  Go to UniProtKB:  P60488

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L14	J [auth RO], MB [auth YO]	122	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP8  Go to UniProtKB:  Q5SHP8

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L15	K [auth RP], NB [auth YP]	150	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ7  Go to UniProtKB:  Q5SHQ7

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L16	L [auth RQ], OB [auth YQ]	141	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60489 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60489  Go to UniProtKB:  P60489

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L17	M [auth RR], PB [auth YR]	118	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q9Z9H5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q9Z9H5  Go to UniProtKB:  Q9Z9H5

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L18	N [auth RS], QB [auth YS]	112	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ4 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ4  Go to UniProtKB:  Q5SHQ4

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L19	O [auth RT], RB [auth YT]	146	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60490 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60490  Go to UniProtKB:  P60490

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L20	P [auth RU], SB [auth YU]	118	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60491 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60491  Go to UniProtKB:  P60491

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L21	Q [auth RV], TB [auth YV]	101	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60492 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60492  Go to UniProtKB:  P60492

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L22	R [auth RW], UB [auth YW]	113	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP3  Go to UniProtKB:  Q5SHP3

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L23	S [auth RX], VB [auth YX]	96	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP0  Go to UniProtKB:  Q5SHP0

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L24	T [auth RY], WB [auth YY]	110	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP9  Go to UniProtKB:  Q5SHP9

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L25	U [auth RZ], XB [auth YZ]	206	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHZ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHZ1  Go to UniProtKB:  Q5SHZ1

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L27	V [auth R0], YB [auth Y0]	85	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60493 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60493  Go to UniProtKB:  P60493

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L28	W [auth R1], ZB [auth Y1]	98	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P60494 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P60494  Go to UniProtKB:  P60494

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L29	AC [auth Y2], X [auth R2]	72	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP6  Go to UniProtKB:  Q5SHP6

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L30	BC [auth Y3], Y [auth R3]	60	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ6  Go to UniProtKB:  Q5SHQ6

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L31	CC [auth Y4], Z [auth R4]	71	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SJE1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJE1  Go to UniProtKB:  Q5SJE1

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L32	AA [auth R5], DC [auth Y5]	60	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80339 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80339  Go to UniProtKB:  P80339

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L33	BA [auth R6], EC [auth Y6]	54	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P35871 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P35871  Go to UniProtKB:  P35871

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L34	CA [auth R7], FC [auth Y7]	49	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80340 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80340  Go to UniProtKB:  P80340

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L35	DA [auth R8], GC [auth Y8]	65	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SKU1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SKU1  Go to UniProtKB:  Q5SKU1

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L36	EA [auth R9], HC [auth Y9]	37	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHR2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHR2  Go to UniProtKB:  Q5SHR2

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S2	GA [auth QB], JC [auth XB]	256	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80371 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80371  Go to UniProtKB:  P80371

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S3	HA [auth QC], KC [auth XC]	239	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80372 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80372  Go to UniProtKB:  P80372

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S4	IA [auth QD], LC [auth XD]	209	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80373 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80373  Go to UniProtKB:  P80373

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S5	JA [auth QE], MC [auth XE]	162	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHQ5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHQ5  Go to UniProtKB:  Q5SHQ5

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6	KA [auth QF], NC [auth XF]	101	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SLP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLP8  Go to UniProtKB:  Q5SLP8

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S7	LA [auth QG], OC [auth XG]	156	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P17291 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P17291  Go to UniProtKB:  P17291

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S8	MA [auth QH], PC [auth XH]	138	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P0DOY9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P0DOY9  Go to UniProtKB:  P0DOY9

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S9	NA [auth QI], QC [auth XI]	128	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80374 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80374  Go to UniProtKB:  P80374

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S10	OA [auth QJ], RC [auth XJ]	105	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN7  Go to UniProtKB:  Q5SHN7

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S11	PA [auth QK], SC [auth XK]	129	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80376 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80376  Go to UniProtKB:  P80376

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S12	QA [auth QL], TC [auth XL]	132	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHN3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHN3  Go to UniProtKB:  Q5SHN3

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S13	RA [auth QM], UC [auth XM]	126	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80377 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80377  Go to UniProtKB:  P80377

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S14 type Z	SA [auth QN], VC [auth XN]	61	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P0DOY6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P0DOY6  Go to UniProtKB:  P0DOY6

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S15	TA [auth QO], WC [auth XO]	89	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SJ76 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJ76  Go to UniProtKB:  Q5SJ76

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S16	UA [auth QP], XC [auth XP]	88	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SJH3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJH3  Go to UniProtKB:  Q5SJH3

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17	VA [auth QQ], YC [auth XQ]	105	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P0DOY7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P0DOY7  Go to UniProtKB:  P0DOY7

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S18	WA [auth QR], ZC [auth XR]	88	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SLQ0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLQ0  Go to UniProtKB:  Q5SLQ0

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S19	AD [auth XS], XA [auth QS]	93	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SHP2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP2  Go to UniProtKB:  Q5SHP2

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S20	BD [auth XT], YA [auth QT]	106	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for P80380 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P80380  Go to UniProtKB:  P80380

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein Thx	CD [auth XU], ZA [auth QU]	27	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SIH3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SIH3  Go to UniProtKB:  Q5SIH3

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptide chain release factor 1	CB [auth QY], FD [auth XY]	360	Escherichia coli O139:H28 str. E24377A	Mutation(s): 0  Gene Names: prfA, EcE24377A_1359
UniProt
Find proteins for P0A7I0 (Escherichia coli (strain K12)) Explore P0A7I0  Go to UniProtKB:  P0A7I0

Entity ID: 1
Molecule	Chains	Length	Organism	Image
23S rRNA	A [auth RA], DB [auth YA]	2,915	Thermus thermophilus HB8

Entity ID: 2
Molecule	Chains	Length	Organism	Image
5S rRNA	B [auth RB], EB [auth YB]	122	Thermus thermophilus HB8

Entity ID: 32
Molecule	Chains	Length	Organism	Image
16S rRNA	FA [auth QA], IC [auth XA]	1,521	Thermus thermophilus HB8

Entity ID: 53
Molecule	Chains	Length	Organism	Image
P-site tRNA fMet	AB [auth QV], DD [auth XV]	77	Escherichia coli JJ1887

Entity ID: 54
Molecule	Chains	Length	Organism	Image
messenger RNA	BB [auth QX], ED [auth XX]	25	synthetic construct

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SF4	JFB [auth QD], WSC [auth XD]	IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N
ZN	EVA [auth R9], FLC [auth YY], FTC [auth XN], HUA [auth RY], ILC [auth Y4], LLC [auth Y5], MLC [auth Y6], QLC [auth Y9], WFB [auth QN], WUA [auth R4], XUA [auth R5], ZUA [auth R6]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG	AAA [auth RA], AAB [auth QA], AAC [auth YA], ABA [auth RA], ABB [auth QA], ABC [auth YA], ACA [auth RA], ACB [auth QA], ACC [auth YA], ADA [auth RA], ADB [auth QA], ADC [auth YA], AE [auth RA], AEA [auth RA], AEB [auth QA], AEC [auth YA], AF [auth RA], AFA [auth RA], AFB [auth QA], AFC [auth YA], AG [auth RA], AGA [auth RA], AGB [auth QR], AGC [auth YA], AH [auth RA], AHA [auth RA], AHB [auth YA], AHC [auth YA], AI [auth RA], AIA [auth RA], AIB [auth YA], AIC [auth YA], AJ [auth RA], AJA [auth RA], AJB [auth YA], AJC [auth YA], AK [auth RA], AKA [auth RA], AKB [auth YA], AKC [auth YD], AL [auth RA], ALA [auth RA], ALB [auth YA], ALC [auth YT], AM [auth RA], AMA [auth RA], AMB [auth YA], AMC [auth XA], AN [auth RA], ANA [auth RA], ANB [auth YA], ANC [auth XA], AO [auth RA], AOA [auth RA], AOB [auth YA], AOC [auth XA], AP [auth RA], APA [auth RA], APB [auth YA], APC [auth XA], AQ [auth RA], AQA [auth RA], AQB [auth YA], AQC [auth XA], AR [auth RA], ARA [auth RB], ARB [auth YA], ARC [auth XA], AS [auth RA], ASA [auth RD], ASB [auth YA], ASC [auth XA], AT [auth RA], ATA [auth RF], ATB [auth YA], ATC [auth XF], AU [auth RA], AUA [auth RV], AUB [auth YA], AV [auth RA], AVA [auth R7], AVB [auth YA], AW [auth RA], AWA [auth QA], AWB [auth YA], AX [auth RA], AXA [auth QA], AXB [auth YA], AY [auth RA], AYA [auth QA], AYB [auth YA], AZ [auth RA], AZA [auth QA], AZB [auth YA], BAA [auth RA], BAB [auth QA], BAC [auth YA], BBA [auth RA], BBB [auth QA], BBC [auth YA], BCA [auth RA], BCB [auth QA], BCC [auth YA], BDA [auth RA], BDB [auth QA], BDC [auth YA], BE [auth RA], BEA [auth RA], BEB [auth QA], BEC [auth YA], BF [auth RA], BFA [auth RA], BFB [auth QA], BFC [auth YA], BG [auth RA], BGA [auth RA], BGB [auth QT], BGC [auth YA], BH [auth RA], BHA [auth RA], BHB [auth YA], BHC [auth YA], BI [auth RA], BIA [auth RA], BIB [auth YA], BIC [auth YA], BJ [auth RA], BJA [auth RA], BJB [auth YA], BJC [auth YA], BK [auth RA], BKA [auth RA], BKB [auth YA], BKC [auth YD], BL [auth RA], BLA [auth RA], BLB [auth YA], BLC [auth YV], BM [auth RA], BMA [auth RA], BMB [auth YA], BMC [auth XA], BN [auth RA], BNA [auth RA], BNB [auth YA], BNC [auth XA], BO [auth RA], BOA [auth RA], BOB [auth YA], BOC [auth XA], BP [auth RA], BPA [auth RA], BPB [auth YA], BPC [auth XA], BQ [auth RA], BQA [auth RA], BQB [auth YA], BQC [auth XA], BR [auth RA], BRA [auth RB], BRB [auth YA], BRC [auth XA], BS [auth RA], BSA [auth RD], BSB [auth YA], BSC [auth XA], BT [auth RA], BTA [auth RG], BTB [auth YA], BTC [auth XF], BU [auth RA], BUA [auth RV], BUB [auth YA], BV [auth RA], BVA [auth R7], BVB [auth YA], BW [auth RA], BWA [auth QA], BWB [auth YA], BX [auth RA], BXA [auth QA], BXB [auth YA], BY [auth RA], BYA [auth QA], BYB [auth YA], BZ [auth RA], BZA [auth QA], BZB [auth YA], CAA [auth RA], CAB [auth QA], CAC [auth YA], CBA [auth RA], CBB [auth QA], CBC [auth YA], CCA [auth RA], CCB [auth QA], CCC [auth YA], CDA [auth RA], CDB [auth QA], CDC [auth YA], CE [auth RA], CEA [auth RA], CEB [auth QA], CEC [auth YA], CF [auth RA], CFA [auth RA], CFB [auth QA], CFC [auth YA], CG [auth RA], CGA [auth RA], CGB [auth QV], CGC [auth YA], CH [auth RA], CHA [auth RA], CHB [auth YA], CHC [auth YA], CI [auth RA], CIA [auth RA], CIB [auth YA], CIC [auth YA], CJ [auth RA], CJA [auth RA], CJB [auth YA], CJC [auth YA], CK [auth RA], CKA [auth RA], CKB [auth YA], CKC [auth YD], CL [auth RA], CLA [auth RA], CLB [auth YA], CLC [auth YW], CM [auth RA], CMA [auth RA], CMB [auth YA], CMC [auth XA], CN [auth RA], CNA [auth RA], CNB [auth YA], CNC [auth XA], CO [auth RA], COA [auth RA], COB [auth YA], COC [auth XA], CP [auth RA], CPA [auth RA], CPB [auth YA], CPC [auth XA], CQ [auth RA], CQA [auth RA], CQB [auth YA], CQC [auth XA], CR [auth RA], CRA [auth RB], CRB [auth YA], CRC [auth XA], CS [auth RA], CSA [auth RD], CSB [auth YA], CSC [auth XA], CT [auth RA], CTA [auth RG], CTB [auth YA], CTC [auth XF], CU [auth RA], CUA [auth RV], CUB [auth YA], CV [auth RA], CVA [auth R7], CVB [auth YA], CW [auth RA], CWA [auth QA], CWB [auth YA], CX [auth RA], CXA [auth QA], CXB [auth YA], CY [auth RA], CYA [auth QA], CYB [auth YA], CZ [auth RA], CZA [auth QA], CZB [auth YA], DAA [auth RA], DAB [auth QA], DAC [auth YA], DBA [auth RA], DBB [auth QA], DBC [auth YA], DCA [auth RA], DCB [auth QA], DCC [auth YA], DDA [auth RA], DDB [auth QA], DDC [auth YA], DE [auth RA], DEA [auth RA], DEB [auth QA], DEC [auth YA], DF [auth RA], DFA [auth RA], DFB [auth QA], DFC [auth YA], DG [auth RA], DGA [auth RA], DGB [auth QV], DGC [auth YA], DH [auth RA], DHA [auth RA], DHB [auth YA], DHC [auth YA], DI [auth RA], DIA [auth RA], DIB [auth YA], DIC [auth YA], DJ [auth RA], DJA [auth RA], DJB [auth YA], DJC [auth YB], DK [auth RA], DKA [auth RA], DKB [auth YA], DKC [auth YD], DL [auth RA], DLA [auth RA], DLB [auth YA], DLC [auth YW], DM [auth RA], DMA [auth RA], DMB [auth YA], DMC [auth XA], DN [auth RA], DNA [auth RA], DNB [auth YA], DNC [auth XA], DO [auth RA], DOA [auth RA], DOB [auth YA], DOC [auth XA], DP [auth RA], DPA [auth RA], DPB [auth YA], DPC [auth XA], DQ [auth RA], DQA [auth RA], DQB [auth YA], DQC [auth XA], DR [auth RA], DRA [auth RB], DRB [auth YA], DRC [auth XA], DS [auth RA], DSA [auth RD], DSB [auth YA], DSC [auth XA], DT [auth RA], DTA [auth RG], DTB [auth YA], DTC [auth XJ], DU [auth RA], DUA [auth RW], DUB [auth YA], DV [auth RA], DVA [auth R9], DVB [auth YA], DW [auth RA], DWA [auth QA], DWB [auth YA], DX [auth RA], DXA [auth QA], DXB [auth YA], DY [auth RA], DYA [auth QA], DYB [auth YA], DZ [auth RA], DZA [auth QA], DZB [auth YA], EAA [auth RA], EAB [auth QA], EAC [auth YA], EBA [auth RA], EBB [auth QA], EBC [auth YA], ECA [auth RA], ECB [auth QA], ECC [auth YA], EDA [auth RA], EDB [auth QA], EDC [auth YA], EE [auth RA], EEA [auth RA], EEB [auth QA], EEC [auth YA], EF [auth RA], EFA [auth RA], EFB [auth QA], EFC [auth YA], EG [auth RA], EGA [auth RA], EGB [auth QV], EGC [auth YA], EH [auth RA], EHA [auth RA], EHB [auth YA], EHC [auth YA], EI [auth RA], EIA [auth RA], EIB [auth YA], EIC [auth YA], EJ [auth RA], EJA [auth RA], EJB [auth YA], EJC [auth YB], EK [auth RA], EKA [auth RA], EKB [auth YA], EKC [auth YD], EL [auth RA], ELA [auth RA], ELB [auth YA], ELC [auth YX], EM [auth RA], EMA [auth RA], EMB [auth YA], EMC [auth XA], EN [auth RA], ENA [auth RA], ENB [auth YA], ENC [auth XA], EO [auth RA], EOA [auth RA], EOB [auth YA], EOC [auth XA], EP [auth RA], EPA [auth RA], EPB [auth YA], EPC [auth XA], EQ [auth RA], EQA [auth RA], EQB [auth YA], EQC [auth XA], ER [auth RA], ERA [auth RB], ERB [auth YA], ERC [auth XA], ES [auth RA], ESA [auth RD], ESB [auth YA], ESC [auth XA], ET [auth RA], ETA [auth RG], ETB [auth YA], ETC [auth XL], EU [auth RA], EUA [auth RW], EUB [auth YA], EV [auth RA], EVB [auth YA], EW [auth RA], EWA [auth QA], EWB [auth YA], EX [auth RA], EXA [auth QA], EXB [auth YA], EY [auth RA], EYA [auth QA], EYB [auth YA], EZ [auth RA], EZA [auth QA], EZB [auth YA], FAA [auth RA], FAB [auth QA], FAC [auth YA], FBA [auth RA], FBB [auth QA], FBC [auth YA], FCA [auth RA], FCB [auth QA], FCC [auth YA], FDA [auth RA], FDB [auth QA], FDC [auth YA], FE [auth RA], FEA [auth RA], FEB [auth QA], FEC [auth YA], FF [auth RA], FFA [auth RA], FFB [auth QA], FFC [auth YA], FG [auth RA], FGA [auth RA], FGB [auth QV], FGC [auth YA], FH [auth RA], FHA [auth RA], FHB [auth YA], FHC [auth YA], FI [auth RA], FIA [auth RA], FIB [auth YA], FIC [auth YA], FJ [auth RA], FJA [auth RA], FJB [auth YA], FJC [auth YB], FK [auth RA], FKA [auth RA], FKB [auth YA], FKC [auth YD], FL [auth RA], FLA [auth RA], FLB [auth YA], FM [auth RA], FMA [auth RA], FMB [auth YA], FMC [auth XA], FN [auth RA], FNA [auth RA], FNB [auth YA], FNC [auth XA], FO [auth RA], FOA [auth RA], FOB [auth YA], FOC [auth XA], FP [auth RA], FPA [auth RA], FPB [auth YA], FPC [auth XA], FQ [auth RA], FQA [auth RA], FQB [auth YA], FQC [auth XA], FR [auth RA], FRA [auth RB], FRB [auth YA], FRC [auth XA], FS [auth RA], FSA [auth RD], FSB [auth YA], FSC [auth XA], FT [auth RA], FTA [auth RN], FTB [auth YA], FU [auth RA], FUA [auth RX], FUB [auth YA], FV [auth RA], FVA [auth QA], FVB [auth YA], FW [auth RA], FWA [auth QA], FWB [auth YA], FX [auth RA], FXA [auth QA], FXB [auth YA], FY [auth RA], FYA [auth QA], FYB [auth YA], FZ [auth RA], FZA [auth QA], FZB [auth YA], GAA [auth RA], GAB [auth QA], GAC [auth YA], GBA [auth RA], GBB [auth QA], GBC [auth YA], GCA [auth RA], GCB [auth QA], GCC [auth YA], GD [auth RA], GDA [auth RA], GDB [auth QA], GDC [auth YA], GE [auth RA], GEA [auth RA], GEB [auth QA], GEC [auth YA], GF [auth RA], GFA [auth RA], GFB [auth QA], GFC [auth YA], GG [auth RA], GGA [auth RA], GGB [auth QV], GGC [auth YA], GH [auth RA], GHA [auth RA], GHB [auth YA], GHC [auth YA], GI [auth RA], GIA [auth RA], GIB [auth YA], GIC [auth YA], GJ [auth RA], GJA [auth RA], GJB [auth YA], GJC [auth YB], GK [auth RA], GKA [auth RA], GKB [auth YA], GKC [auth YE], GL [auth RA], GLA [auth RA], GLB [auth YA], GLC [auth Y0], GM [auth RA], GMA [auth RA], GMB [auth YA], GMC [auth XA], GN [auth RA], GNA [auth RA], GNB [auth YA], GNC [auth XA], GO [auth RA], GOA [auth RA], GOB [auth YA], GOC [auth XA], GP [auth RA], GPA [auth RA], GPB [auth YA], GPC [auth XA], GQ [auth RA], GQA [auth RA], GQB [auth YA], GQC [auth XA], GR [auth RA], GRA [auth RB], GRB [auth YA], GRC [auth XA], GS [auth RA], GSA [auth RD], GSB [auth YA], GSC [auth XA], GT [auth RA], GTA [auth RN], GTB [auth YA], GTC [auth XT], GU [auth RA], GUA [auth RY], GUB [auth YA], GV [auth RA], GVA [auth QA], GVB [auth YA], GW [auth RA], GWA [auth QA], GWB [auth YA], GX [auth RA], GXA [auth QA], GXB [auth YA], GY [auth RA], GYA [auth QA], GYB [auth YA], GZ [auth RA], GZA [auth QA], GZB [auth YA], HAA [auth RA], HAB [auth QA], HAC [auth YA], HBA [auth RA], HBB [auth QA], HBC [auth YA], HCA [auth RA], HCB [auth QA], HCC [auth YA], HD [auth RA], HDA [auth RA], HDB [auth QA], HDC [auth YA], HE [auth RA], HEA [auth RA], HEB [auth QA], HEC [auth YA], HF [auth RA], HFA [auth RA], HFB [auth QB], HFC [auth YA], HG [auth RA], HGA [auth RA], HGB [auth QV], HGC [auth YA], HH [auth RA], HHA [auth RA], HHB [auth YA], HHC [auth YA], HI [auth RA], HIA [auth RA], HIB [auth YA], HIC [auth YA], HJ [auth RA], HJA [auth RA], HJB [auth YA], HJC [auth YB], HK [auth RA], HKA [auth RA], HKB [auth YA], HKC [auth YE], HL [auth RA], HLA [auth RA], HLB [auth YA], HLC [auth Y1], HM [auth RA], HMA [auth RA], HMB [auth YA], HMC [auth XA], HN [auth RA], HNA [auth RA], HNB [auth YA], HNC [auth XA], HO [auth RA], HOA [auth RA], HOB [auth YA], HOC [auth XA], HP [auth RA], HPA [auth RA], HPB [auth YA], HPC [auth XA], HQ [auth RA], HQA [auth RA], HQB [auth YA], HQC [auth XA], HR [auth RA], HRA [auth RB], HRB [auth YA], HRC [auth XA], HS [auth RA], HSA [auth RD], HSB [auth YA], HSC [auth XA], HT [auth RA], HTA [auth RO], HTB [auth YA], HTC [auth XV], HU [auth RA], HUB [auth YA], HV [auth RA], HVA [auth QA], HVB [auth YA], HW [auth RA], HWA [auth QA], HWB [auth YA], HX [auth RA], HXA [auth QA], HXB [auth YA], HY [auth RA], HYA [auth QA], HYB [auth YA], HZ [auth RA], HZA [auth QA], HZB [auth YA], IAA [auth RA], IAB [auth QA], IAC [auth YA], IBA [auth RA], IBB [auth QA], IBC [auth YA], ICA [auth RA], ICB [auth QA], ICC [auth YA], ID [auth RA], IDA [auth RA], IDB [auth QA], IDC [auth YA], IE [auth RA], IEA [auth RA], IEB [auth QA], IEC [auth YA], IF [auth RA], IFA [auth RA], IFB [auth QD], IFC [auth YA], IG [auth RA], IGA [auth RA], IGB [auth YA], IGC [auth YA], IH [auth RA], IHA [auth RA], IHB [auth YA], IHC [auth YA], II [auth RA], IIA [auth RA], IIB [auth YA], IIC [auth YA], IJ [auth RA], IJA [auth RA], IJB [auth YA], IJC [auth YB], IK [auth RA], IKA [auth RA], IKB [auth YA], IKC [auth YE], IL [auth RA], ILA [auth RA], ILB [auth YA], IM [auth RA], IMA [auth RA], IMB [auth YA], IMC [auth XA], IN [auth RA], INA [auth RA], INB [auth YA], INC [auth XA], IO [auth RA], IOA [auth RA], IOB [auth YA], IOC [auth XA], IP [auth RA], IPA [auth RA], IPB [auth YA], IPC [auth XA], IQ [auth RA], IQA [auth RA], IQB [auth YA], IQC [auth XA], IR [auth RA], IRA [auth RB], IRB [auth YA], IRC [auth XA], IS [auth RA], ISA [auth RD], ISB [auth YA], ISC [auth XA], IT [auth RA], ITA [auth RP], ITB [auth YA], ITC [auth XV], IU [auth RA], IUA [auth R0], IUB [auth YA], IV [auth RA], IVA [auth QA], IVB [auth YA], IW [auth RA], IWA [auth QA], IWB [auth YA], IX [auth RA], IXA [auth QA], IXB [auth YA], IY [auth RA], IYA [auth QA], IYB [auth YA], IZ [auth RA], IZA [auth QA], IZB [auth YA], JAA [auth RA], JAB [auth QA], JAC [auth YA], JBA [auth RA], JBB [auth QA], JBC [auth YA], JCA [auth RA], JCB [auth QA], JCC [auth YA], JD [auth RA], JDA [auth RA], JDB [auth QA], JDC [auth YA], JE [auth RA], JEA [auth RA], JEB [auth QA], JEC [auth YA], JF [auth RA], JFA [auth RA], JFC [auth YA], JG [auth RA], JGA [auth RA], JGB [auth YA], JGC [auth YA], JH [auth RA], JHA [auth RA], JHB [auth YA], JHC [auth YA], JI [auth RA], JIA [auth RA], JIB [auth YA], JIC [auth YA], JJ [auth RA], JJA [auth RA], JJB [auth YA], JJC [auth YB], JK [auth RA], JKA [auth RA], JKB [auth YA], JKC [auth YE], JL [auth RA], JLA [auth RA], JLB [auth YA], JLC [auth Y5], JM [auth RA], JMA [auth RA], JMB [auth YA], JMC [auth XA], JN [auth RA], JNA [auth RA], JNB [auth YA], JNC [auth XA], JO [auth RA], JOA [auth RA], JOB [auth YA], JOC [auth XA], JP [auth RA], JPA [auth RA], JPB [auth YA], JPC [auth XA], JQ [auth RA], JQA [auth RA], JQB [auth YA], JQC [auth XA], JR [auth RA], JRA [auth RB], JRB [auth YA], JRC [auth XA], JS [auth RA], JSA [auth RE], JSB [auth YA], JSC [auth XA], JT [auth RA], JTA [auth RP], JTB [auth YA], JTC [auth XV], JU [auth RA], JUA [auth R0], JUB [auth YA], JV [auth RA], JVA [auth QA], JVB [auth YA], JW [auth RA], JWA [auth QA], JWB [auth YA], JX [auth RA], JXA [auth QA], JXB [auth YA], JY [auth RA], JYA [auth QA], JYB [auth YA], JZ [auth RA], JZA [auth QA], JZB [auth YA], KAA [auth RA], KAB [auth QA], KAC [auth YA], KBA [auth RA], KBB [auth QA], KBC [auth YA], KCA [auth RA], KCB [auth QA], KCC [auth YA], KD [auth RA], KDA [auth RA], KDB [auth QA], KDC [auth YA], KE [auth RA], KEA [auth RA], KEB [auth QA], KEC [auth YA], KF [auth RA], KFA [auth RA], KFB [auth QD], KFC [auth YA], KG [auth RA], KGA [auth RA], KGB [auth YA], KGC [auth YA], KH [auth RA], KHA [auth RA], KHB [auth YA], KHC [auth YA], KI [auth RA], KIA [auth RA], KIB [auth YA], KIC [auth YA], KJ [auth RA], KJA [auth RA], KJB [auth YA], KJC [auth YB], KK [auth RA], KKA [auth RA], KKB [auth YA], KKC [auth YE], KL [auth RA], KLA [auth RA], KLB [auth YA], KLC [auth Y5], KM [auth RA], KMA [auth RA], KMB [auth YA], KMC [auth XA], KN [auth RA], KNA [auth RA], KNB [auth YA], KNC [auth XA], KO [auth RA], KOA [auth RA], KOB [auth YA], KOC [auth XA], KP [auth RA], KPA [auth RA], KPB [auth YA], KPC [auth XA], KQ [auth RA], KQA [auth RA], KQB [auth YA], KQC [auth XA], KR [auth RA], KRA [auth RB], KRB [auth YA], KRC [auth XA], KS [auth RA], KSA [auth RE], KSB [auth YA], KSC [auth XA], KT [auth RA], KTA [auth RQ], KTB [auth YA], KTC [auth XV], KU [auth RA], KUA [auth R0], KUB [auth YA], KV [auth RA], KVA [auth QA], KVB [auth YA], KW [auth RA], KWA [auth QA], KWB [auth YA], KX [auth RA], KXA [auth QA], KXB [auth YA], KY [auth RA], KYA [auth QA], KYB [auth YA], KZ [auth RA], KZA [auth QA], KZB [auth YA], LAA [auth RA], LAB [auth QA], LAC [auth YA], LBA [auth RA], LBB [auth QA], LBC [auth YA], LCA [auth RA], LCB [auth QA], LCC [auth YA], LD [auth RA], LDA [auth RA], LDB [auth QA], LDC [auth YA], LE [auth RA], LEA [auth RA], LEB [auth QA], LEC [auth YA], LF [auth RA], LFA [auth RA], LFB [auth QE], LFC [auth YA], LG [auth RA], LGA [auth RA], LGB [auth YA], LGC [auth YA], LH [auth RA], LHA [auth RA], LHB [auth YA], LHC [auth YA], LI [auth RA], LIA [auth RA], LIB [auth YA], LIC [auth YA], LJ [auth RA], LJA [auth RA], LJB [auth YA], LJC [auth YB], LK [auth RA], LKA [auth RA], LKB [auth YA], LKC [auth YE], LL [auth RA], LLA [auth RA], LLB [auth YA], LM [auth RA], LMA [auth RA], LMB [auth YA], LMC [auth XA], LN [auth RA], LNA [auth RA], LNB [auth YA], LNC [auth XA], LO [auth RA], LOA [auth RA], LOB [auth YA], LOC [auth XA], LP [auth RA], LPA [auth RA], LPB [auth YA], LPC [auth XA], LQ [auth RA], LQA [auth RA], LQB [auth YA], LQC [auth XA], LR [auth RA], LRA [auth RB], LRB [auth YA], LRC [auth XA], LS [auth RA], LSA [auth RE], LSB [auth YA], LSC [auth XA], LT [auth RA], LTA [auth RQ], LTB [auth YA], LTC [auth XY], LU [auth RA], LUA [auth R0], LUB [auth YA], LV [auth RA], LVA [auth QA], LVB [auth YA], LW [auth RA], LWA [auth QA], LWB [auth YA], LX [auth RA], LXA [auth QA], LXB [auth YA], LY [auth RA], LYA [auth QA], LYB [auth YA], LZ [auth RA], LZA [auth QA], LZB [auth YA], MAA [auth RA], MAB [auth QA], MAC [auth YA], MBA [auth RA], MBB [auth QA], MBC [auth YA], MCA [auth RA], MCB [auth QA], MCC [auth YA], MD [auth RA], MDA [auth RA], MDB [auth QA], MDC [auth YA], ME [auth RA], MEA [auth RA], MEB [auth QA], MEC [auth YA], MF [auth RA], MFA [auth RA], MFB [auth QE], MFC [auth YA], MG [auth RA], MGA [auth RA], MGB [auth YA], MGC [auth YA], MH [auth RA], MHA [auth RA], MHB [auth YA], MHC [auth YA], MI [auth RA], MIA [auth RA], MIB [auth YA], MIC [auth YA], MJ [auth RA], MJA [auth RA], MJB [auth YA], MJC [auth YB], MK [auth RA], MKA [auth RA], MKB [auth YA], MKC [auth YF], ML [auth RA], MLA [auth RA], MLB [auth YA], MM [auth RA], MMA [auth RA], MMB [auth YA], MMC [auth XA], MN [auth RA], MNA [auth RA], MNB [auth YA], MNC [auth XA], MO [auth RA], MOA [auth RA], MOB [auth YA], MOC [auth XA], MP [auth RA], MPA [auth RA], MPB [auth YA], MPC [auth XA], MQ [auth RA], MQA [auth RA], MQB [auth YA], MQC [auth XA], MR [auth RA], MRA [auth RB], MRB [auth YA], MRC [auth XA], MS [auth RA], MSA [auth RE], MSB [auth YA], MSC [auth XA], MT [auth RA], MTA [auth RQ], MTB [auth YA], MU [auth RA], MUA [auth R0], MUB [auth YA], MV [auth RA], MVA [auth QA], MVB [auth YA], MW [auth RA], MWA [auth QA], MWB [auth YA], MX [auth RA], MXA [auth QA], MXB [auth YA], MY [auth RA], MYA [auth QA], MYB [auth YA], MZ [auth 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[auth QA], PVB [auth YA], PW [auth RA], PWA [auth QA], PWB [auth YA], PX [auth RA], PXA [auth QA], PXB [auth YA], PY [auth RA], PYA [auth QA], PYB [auth YA], PZ [auth RA], PZA [auth QA], PZB [auth YA], QAA [auth RA], QAB [auth QA], QAC [auth YA], QBA [auth RA], QBB [auth QA], QBC [auth YA], QCA [auth RA], QCB [auth QA], QCC [auth YA], QD [auth RA], QDA [auth RA], QDB [auth QA], QDC [auth YA], QE [auth RA], QEA [auth RA], QEB [auth QA], QEC [auth YA], QF [auth RA], QFA [auth RA], QFB [auth QG], QFC [auth YA], QG [auth RA], QGA [auth RA], QGB [auth YA], QGC [auth YA], QH [auth RA], QHA [auth RA], QHB [auth YA], QHC [auth YA], QI [auth RA], QIA [auth RA], QIB [auth YA], QIC [auth YA], QJ [auth RA], QJA [auth RA], QJB [auth YA], QJC [auth YB], QK [auth RA], QKA [auth RA], QKB [auth YA], QKC [auth YI], QL [auth RA], QLA [auth RA], QLB [auth YA], QM [auth RA], QMA [auth RA], QMB [auth YA], QMC [auth XA], QN [auth RA], QNA [auth RA], QNB [auth YA], QNC [auth XA], QO [auth RA], QOA [auth RA], 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SSA [auth RF], SSB [auth YA], SSC [auth XA], ST [auth RA], STA [auth RR], STB [auth YA], SU [auth RA], SUA [auth R1], SUB [auth YA], SV [auth RA], SVA [auth QA], SVB [auth YA], SW [auth RA], SWA [auth QA], SWB [auth YA], SX [auth RA], SXA [auth QA], SXB [auth YA], SY [auth RA], SYA [auth QA], SYB [auth YA], SZ [auth RA], SZA [auth QA], SZB [auth YA], TAA [auth RA], TAB [auth QA], TAC [auth YA], TBA [auth RA], TBB [auth QA], TBC [auth YA], TCA [auth RA], TCB [auth QA], TCC [auth YA], TD [auth RA], TDA [auth RA], TDB [auth QA], TDC [auth YA], TE [auth RA], TEA [auth RA], TEB [auth QA], TEC [auth YA], TF [auth RA], TFA [auth RA], TFB [auth QJ], TFC [auth YA], TG [auth RA], TGA [auth RA], TGB [auth YA], TGC [auth YA], TH [auth RA], THA [auth RA], THB [auth YA], THC [auth YA], TI [auth RA], TIA [auth RA], TIB [auth YA], TIC [auth YA], TJ [auth RA], TJA [auth RA], TJB [auth YA], TJC [auth YB], TK [auth RA], TKA [auth RA], TKB [auth YA], TKC [auth YP], TL [auth RA], TLA [auth RA], TLB [auth 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[auth RA], UFA [auth RA], UFB [auth QL], UFC [auth YA], UG [auth RA], UGA [auth RA], UGB [auth YA], UGC [auth YA], UH [auth RA], UHA [auth RA], UHB [auth YA], UHC [auth YA], UI [auth RA], UIA [auth RA], UIB [auth YA], UIC [auth YA], UJ [auth RA], UJA [auth RA], UJB [auth YA], UJC [auth YB], UK [auth RA], UKA [auth RA], UKB [auth YA], UKC [auth YQ], UL [auth RA], ULA [auth RA], ULB [auth YA], ULC [auth XA], UM [auth RA], UMA [auth RA], UMB [auth YA], UMC [auth XA], UN [auth RA], UNA [auth RA], UNB [auth YA], UNC [auth XA], UO [auth RA], UOA [auth RA], UOB [auth YA], UOC [auth XA], UP [auth RA], UPA [auth RA], UPB [auth YA], UPC [auth XA], UQ [auth RA], UQA [auth RA], UQB [auth YA], UQC [auth XA], UR [auth RA], URA [auth RD], URB [auth YA], URC [auth XA], US [auth RA], USA [auth RF], USB [auth YA], USC [auth XA], UT [auth RA], UTA [auth RT], UTB [auth YA], UU [auth RA], UUA [auth R3], UUB [auth YA], UV [auth RA], UVA [auth QA], UVB [auth YA], UW [auth RA], UWA [auth QA], UWB [auth YA], UX [auth RA], UXA [auth QA], UXB [auth YA], UY [auth RA], UYA [auth QA], UYB [auth YA], UZ [auth RA], UZA [auth QA], UZB [auth YA], VAA [auth RA], VAB [auth QA], VAC [auth YA], VBA [auth RA], VBB [auth QA], VBC [auth YA], VCA [auth RA], VCB [auth QA], VCC [auth YA], VD [auth RA], VDA [auth RA], VDB [auth QA], VDC [auth YA], VE [auth RA], VEA [auth RA], VEB [auth QA], VEC [auth YA], VF [auth RA], VFA [auth RA], VFB [auth QL], VFC [auth YA], VG [auth RA], VGA [auth RA], VGB [auth YA], VGC [auth YA], VH [auth RA], VHA [auth RA], VHB [auth YA], VHC [auth YA], VI [auth RA], VIA [auth RA], VIB [auth YA], VIC [auth YA], VJ [auth RA], VJA [auth RA], VJB [auth YA], VJC [auth YB], VK [auth RA], VKA [auth RA], VKB [auth YA], VKC [auth YQ], VL [auth RA], VLA [auth RA], VLB [auth YA], VLC [auth XA], VM [auth RA], VMA [auth RA], VMB [auth YA], VMC [auth XA], VN [auth RA], VNA [auth RA], VNB [auth YA], VNC [auth XA], VO [auth RA], VOA [auth RA], VOB [auth YA], VOC [auth XA], VP [auth RA], VPA [auth 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[auth RA], WJA [auth RA], WJB [auth YA], WJC [auth YB], WK [auth RA], WKA [auth RA], WKB [auth YA], WKC [auth YQ], WL [auth RA], WLA [auth RA], WLB [auth YA], WLC [auth XA], WM [auth RA], WMA [auth RA], WMB [auth YA], WMC [auth XA], WN [auth RA], WNA [auth RA], WNB [auth YA], WNC [auth XA], WO [auth RA], WOA [auth RA], WOB [auth YA], WOC [auth XA], WP [auth RA], WPA [auth RA], WPB [auth YA], WPC [auth XA], WQ [auth RA], WQA [auth RA], WQB [auth YA], WQC [auth XA], WR [auth RA], WRA [auth RD], WRB [auth YA], WRC [auth XA], WS [auth RA], WSA [auth RF], WSB [auth YA], WT [auth RA], WTA [auth RT], WTB [auth YA], WU [auth RA], WUB [auth YA], WV [auth RA], WVA [auth QA], WVB [auth YA], WW [auth RA], WWA [auth QA], WWB [auth YA], WX [auth RA], WXA [auth QA], WXB [auth YA], WY [auth RA], WYA [auth QA], WYB [auth YA], WZ [auth RA], WZA [auth QA], WZB [auth YA], XAA [auth RA], XAB [auth QA], XAC [auth YA], XBA [auth RA], XBB [auth QA], XBC [auth YA], XCA [auth RA], XCB [auth QA], XCC [auth YA], XD [auth RA], XDA [auth RA], XDB [auth QA], XDC [auth YA], XE [auth RA], XEA [auth RA], XEB [auth QA], XEC [auth YA], XF [auth RA], XFA [auth RA], XFB [auth QN], XFC [auth YA], XG [auth RA], XGA [auth RA], XGB [auth YA], XGC [auth YA], XH [auth RA], XHA [auth RA], XHB [auth YA], XHC [auth YA], XI [auth RA], XIA [auth RA], XIB [auth YA], XIC [auth YA], XJ [auth RA], XJA [auth RA], XJB [auth YA], XJC [auth YD], XK [auth RA], XKA [auth RA], XKB [auth YA], XKC [auth YR], XL [auth RA], XLA [auth RA], XLB [auth YA], XLC [auth XA], XM [auth RA], XMA [auth RA], XMB [auth YA], XMC [auth XA], XN [auth RA], XNA [auth RA], XNB [auth YA], XNC [auth XA], XO [auth RA], XOA [auth RA], XOB [auth YA], XOC [auth XA], XP [auth RA], XPA [auth RA], XPB [auth YA], XPC [auth XA], XQ [auth RA], XQA [auth RA], XQB [auth YA], XQC [auth XA], XR [auth RA], XRA [auth RD], XRB [auth YA], XRC [auth XA], XS [auth RA], XSA [auth RF], XSB [auth YA], XSC [auth XE], XT [auth RA], XTA [auth RU], XTB [auth YA], XU [auth RA], XUB [auth YA], XV [auth RA], XVA [auth QA], XVB [auth YA], XW [auth RA], XWA [auth QA], XWB [auth YA], XX [auth RA], XXA [auth QA], XXB [auth YA], XY [auth RA], XYA [auth QA], XYB [auth YA], XZ [auth RA], XZA [auth QA], XZB [auth YA], YAA [auth RA], YAB [auth QA], YAC [auth YA], YBA [auth RA], YBB [auth QA], YBC [auth YA], YCA [auth RA], YCB [auth QA], YCC [auth YA], YD [auth RA], YDA [auth RA], YDB [auth QA], YDC [auth YA], YE [auth RA], YEA [auth RA], YEB [auth QA], YEC [auth YA], YF [auth RA], YFA [auth RA], YFB [auth QO], YFC [auth YA], YG [auth RA], YGA [auth RA], YGB [auth YA], YGC [auth YA], YH [auth RA], YHA [auth RA], YHB [auth YA], YHC [auth YA], YI [auth RA], YIA [auth RA], YIB [auth YA], YIC [auth YA], YJ [auth RA], YJA [auth RA], YJB [auth YA], YJC [auth YD], YK [auth RA], YKA [auth RA], YKB [auth YA], YKC [auth YT], YL [auth RA], YLA [auth RA], YLB [auth YA], YLC [auth XA], YM [auth RA], YMA [auth RA], YMB [auth YA], YMC [auth XA], YN [auth RA], YNA [auth RA], YNB [auth YA], YNC [auth XA], YO [auth RA], YOA [auth RA], YOB [auth YA], YOC [auth XA], YP [auth RA], YPA [auth RA], YPB [auth YA], YPC [auth XA], YQ [auth RA], YQA [auth RB], YQB [auth YA], YQC [auth XA], YR [auth RA], YRA [auth RD], YRB [auth YA], YRC [auth XA], YS [auth RA], YSA [auth RF], YSB [auth YA], YSC [auth XE], YT [auth RA], YTA [auth RU], YTB [auth YA], YU [auth RA], YUA [auth R5], YUB [auth YA], YV [auth RA], YVA [auth QA], YVB [auth YA], YW [auth RA], YWA [auth QA], YWB [auth YA], YX [auth RA], YXA [auth QA], YXB [auth YA], YY [auth RA], YYA [auth QA], YYB [auth YA], YZ [auth RA], YZA [auth QA], YZB [auth YA], ZAA [auth RA], ZAB [auth QA], ZAC [auth YA], ZBA [auth RA], ZBB [auth QA], ZBC [auth YA], ZCA [auth RA], ZCB [auth QA], ZCC [auth YA], ZD [auth RA], ZDA [auth RA], ZDB [auth QA], ZDC [auth YA], ZE [auth RA], ZEA [auth RA], ZEB [auth QA], ZEC [auth YA], ZF [auth RA], ZFA [auth RA], ZFB [auth QQ], ZFC [auth YA], ZG [auth RA], ZGA [auth RA], ZGB [auth YA], ZGC [auth YA], ZH [auth RA], ZHA [auth RA], ZHB [auth YA], ZHC [auth YA], ZI [auth RA], ZIA [auth RA], ZIB [auth YA], ZIC [auth YA], ZJ [auth RA], ZJA [auth RA], ZJB [auth YA], ZJC [auth YD], ZK [auth RA], ZKA [auth RA], ZKB [auth YA], ZKC [auth YT], ZL [auth RA], ZLA [auth RA], ZLB [auth YA], ZLC [auth XA], ZM [auth RA], ZMA [auth RA], ZMB [auth YA], ZMC [auth XA], ZN [auth RA], ZNA [auth RA], ZNB [auth YA], ZNC [auth XA], ZO [auth RA], ZOA [auth RA], ZOB [auth YA], ZOC [auth XA], ZP [auth RA], ZPA [auth RA], ZPB [auth YA], ZPC [auth XA], ZQ [auth RA], ZQA [auth RB], ZQB [auth YA], ZQC [auth XA], ZR [auth RA], ZRA [auth RD], ZRB [auth YA], ZRC [auth XA], ZS [auth RA], ZSA [auth RF], ZSB [auth YA], ZSC [auth XF], ZT [auth RA], ZTA [auth RU], ZTB [auth YA], ZU [auth RA], ZUB [auth YA], ZV [auth RA], ZVA [auth QA], ZVB [auth YA], ZW [auth RA], ZWA [auth QA], ZWB [auth YA], ZX [auth RA], ZXA [auth QA], ZXB [auth YA], ZY [auth RA], ZYA [auth QA], ZYB [auth YA], ZZ [auth RA], ZZA [auth QA], ZZB [auth YA]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
0TD	QA [auth QL], TC [auth XL]	L-PEPTIDE LINKING	C5 H9 N O4 S		ASP

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.04 Å
• R-Value Free:  0.279 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.246 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.248 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 209.51	α = 90
b = 450.89	β = 90
c = 622.07	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-10-12 
Deposition Author(s): Hoffer, E.D., Dunham, C.M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01GM093278
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01GM112641

Revision History  

• Version 1.0: 2016-10-12
  Type: Initial release
  
• Version 1.1: 2017-01-25
  Changes: Structure summary
• Version 1.2: 2017-02-08
  Changes: Derived calculations
• Version 1.3: 2017-09-20
  Changes: Author supporting evidence
• Version 1.4: 2019-12-25
  Changes: Author supporting evidence
• Version 1.5: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.6: 2023-11-15
  Changes: Data collection
• Version 1.7: 2025-02-12
  Changes: Data collection, Structure summary
• Version 1.8: 2025-03-19
  Changes: Data collection