5XHX | pdb_00005xhx

Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa

PDB DOI: https://doi.org/10.2210/pdb5XHX/pdb

Classification: TRANSCRIPTION
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-04-24 Released: 2017-05-24
Deposition Author(s): Gu, L., He, Q., Wang, K., Wang, F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.239 (Depositor), 0.240 (DCC)
R-Value Work:
0.203 (Depositor), 0.200 (DCC)
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa

Gu, L., He, Q., Wang, K., Wang, F.

To be published.

Macromolecule Content

Total Structure Weight: 44.75 kDa
Atom Count: 2,999
Modeled Residue Count: 332
Deposited Residue Count: 390
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Helix-turn-helix transcriptional regulator	A, B	195	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: PA2591, nreC_2, nreC, nreC_1, nreC_3, AOY09_03830, BH593_21715, CCBH4851_00420, PAERUG_E15_London_28_01_14_06660, PAERUG_P32_London_17_VIM_2_10_11_00166... PA2591, nreC_2, nreC, nreC_1, nreC_3, AOY09_03830, BH593_21715, CCBH4851_00420, PAERUG_E15_London_28_01_14_06660, PAERUG_P32_London_17_VIM_2_10_11_00166, PAMH19_6192
UniProt
Find proteins for Q9I0P6 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I0P6 Go to UniProtKB: Q9I0P6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9I0P6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSO Query on CSO	A, B	L-PEPTIDE LINKING	C₃ H₇ N O₃ S		CYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.239 (Depositor), 0.240 (DCC)
R-Value Work: 0.203 (Depositor), 0.200 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.834	α = 90
b = 135.198	β = 90
c = 150.772	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-05-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-05-24
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.